PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001442G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 102aa    MW: 10636 Da    PI: 6.2377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001442G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000136385123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg  F +   L  H+r+H
  PH01001442G0040 63 HECSICGAEFASGQALGGHMRRH 85
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-66087No hitNo description
Gene3DG3DSA:3.30.160.606.8E-46185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-136286IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4296390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MPSEDKKPAV AETTTAEEKP PPPPAQATTD PTVPAIPVIP KQEVDTNATT ITIMRSSKQP  60
RVHECSICGA EFASGQALGG HMRRHRPLVP TSVSAVDDGP T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001442G0040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039893e-31AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040263e-31AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149583e-31AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-31CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.16e-26zinc finger protein ZAT5
TrEMBLA0A0E0KMM42e-25A0A0E0KMM4_ORYPU; ZOS4
STRINGOPUNC04G02120.14e-26(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-14C2H2 family protein