PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001447G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 353aa    MW: 37732.7 Da    PI: 4.8955
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001447G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.82e-2530128185
         trihelix   1 rWtkqevlaLiearremeerlr.rgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                      rWt+qe+l+Lie++r +e r + rg                 + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+  ++ +  
  PH01001447G0230  30 RWTRQEILVLIEGKRMVEGRGGgRGGrgraaaaagegageaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAAAAAR-- 121
                      8**************88887774221344556666677776688******************************************974433.. PP

         trihelix  78 tcpyfdql 85 
                        p f  +
  PH01001447G0230 122 -EPSFWAM 128
                      .4777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-530103IPR009057Homeodomain-like
PfamPF138373.9E-1030127No hitNo description
PROSITE profilePS500906.2630104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSTAGGPAGA GAAAAGAAAA RSGRAPRLPR WTRQEILVLI EGKRMVEGRG GGRGGRGRAA  60
AAAGEGAGEA AALEPKWAAV AEYCRRHGVE RGPVQCRKRW SNLAGDYKKI KEWERAAAAA  120
REPSFWAMRN DARRERRLPG FFDREVYDIL DGRGRGLFAG GSGGNAAEEE EVVHVEEEEE  180
ERGKEKEVGV EETVFDSGRP AGEESLFEEE EEEEAPAPAP ATAAAAVIAL PISEKLEASR  240
QPSTEQGGTS KDKQPEQQGT ERASPARQQG GQKRRRVDGD GDDEDVSGEG AADLQSKLVE  300
ILDRNSRMVA AQLEAQNVNC RLDREQMKDQ ANSLVVVLGR LADALGRIAD KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272276KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001447G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952586.11e-135trihelix transcription factor ASR3
TrEMBLK3YTS81e-133K3YTS8_SETIT; Uncharacterized protein
STRINGSi017674m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-45Trihelix family protein