PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001451G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 261aa    MW: 27900.1 Da    PI: 5.1337
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001451G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      C+ +  + ++ fC  ++  lC+ C    H+       H+
  PH01001451G0380  4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43
                     7*****************************7677777776 PP
2zf-B_box23.11.6e-0763103337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++ C+ ++e +  lfC++++  lC++C +  H        H
  PH01001451G0380  63 PPLCDICQERRGFLFCKEDRAILCRECDVPVHTAseltmrH 103
                      689*******9*****************9999445555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
CDDcd000216.02E-7347No hitNo description
PfamPF006431.3E-5444IPR000315B-box-type zinc finger
SMARTSM003361.1E-1261108IPR000315B-box-type zinc finger
PROSITE profilePS501199.41461108IPR000315B-box-type zinc finger
PfamPF006433.2E-662104IPR000315B-box-type zinc finger
CDDcd000211.26E-864108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP PPYSSASENP  60
PPPPLCDICQ ERRGFLFCKE DRAILCRECD VPVHTASELT MRHNRFLLTG VRLSSEPAAS  120
PAPPSEEENS SSFCCSGDDA APPAPATSHG GSSGSSISEY LTKTLPGWHV EDFLVDDASA  180
AAAAAATSTG ISADGSYQGV TRIGGLQEAG YHAWMAQEQL FCDSVVAGDA LASRERWVPQ  240
MMYTELAGSK RSRTSASNSY W
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001451G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008710.0FP100871.1 Phyllostachys edulis cDNA clone: bphyem121a23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648883.11e-125PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 20-like
SwissprotQ0IGM73e-52BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A0E0CP401e-129A0A0E0CP40_9ORYZ; Uncharacterized protein
STRINGOMERI02G24530.11e-128(Oryza meridionalis)
STRINGOPUNC02G23670.11e-129(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-35DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]