PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001474G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 1722aa    MW: 190303 Da    PI: 6.46
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001474G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.8e-106687071352
                      HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      + L+ +F+kn+yps++ +e LAk+lgLt  qV+ WF   R
  PH01001474G0470 668 QKLKIYFKKNPYPSRAIKESLAKELGLTFHQVTKWFGSTR 707
                      78999*******************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.66E-5291344IPR011011Zinc finger, FYVE/PHD-type
SuperFamilySSF466895.99E-10651708IPR009057Homeodomain-like
PROSITE profilePS5007112.843653713IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-10653704IPR009057Homeodomain-like
SMARTSM003893.8E-10654717IPR001356Homeobox domain
CDDcd000862.46E-11658711No hitNo description
PfamPF000461.4E-7668707IPR001356Homeobox domain
SMARTSM000532.3E-79431180IPR001401Dynamin, GTPase domain
SuperFamilySSF525403.06E-389441257IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.1E-549471258IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5171871.3889631250IPR030381Dynamin-type guanine nucleotide-binding (G) domain
CDDcd087711.42E-629641250No hitNo description
PRINTSPR001952.4E-12966984IPR022812Dynamin superfamily
PfamPF003504.2E-329691149IPR022812Dynamin superfamily
PRINTSPR001952.4E-129911008IPR022812Dynamin superfamily
PRINTSPR001952.4E-1210691086IPR022812Dynamin superfamily
PRINTSPR001952.4E-1211381154IPR022812Dynamin superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1722 aa     Download sequence    Send to blast
MRRSSLSAVG GRLLEEKRKK IEVTVAKVWA VTVEVRRRGR WRRLAAVSAE SPDPVGVEGA  60
RSEGGGWRRW GVGREKGAEG AKGGRKEMGG GATWGGGAVG IGGVDLLAIS NCVRPSFFGL  120
QCKGNGKGKT GGARNSYKRP VKRGRKGSQV LQSDKYPLRS AHGSGRVLRS TSKKNNKAPR  180
EHVNDNTTVQ SAAKKRKRGK PSKGGSPKNE HFKIRQRVRY ILNRMSYEQS LIQAYASEGW  240
KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLS EGKLDESLFD SAGEISSEDI  300
FCAICGSKHA TLKNDIILCD GVCDRVPPGD EGWLCPACDC KLDCIDVLNE LQGSRLCIHD  360
SWEKVFPEAA SLANGSKQID ASDLPSDDSE DNDYNPGLAE GHMVDEDKSS AEDRGEGSDS  420
DGSDFITSSE DSEPSKKKNS ESSKNKRTVD DLGLPSEDSE DDDFDPAGPD SSEDQKDESN  480
SDESDFTSDS DDFCAEVAKS YGQDEVSAPS LSDVRTVDHH NDGMEISAVD KQPIAEDSNH  540
AFMETELEQD MVLPVSSRRQ VERLDYKRLY DEAYGKESSD SSDDEEWSGN STPQKGNQED  600
SETDSLAESL QPSKRCSRRA PAGHQNNEHT PQSERLCGSA SEQQTEVLCS NGSSSTARKK  660
HFGPLISQKL KIYFKKNPYP SRAIKESLAK ELGLTFHQVT KWFGSTRHYS RVAAAKNEKD  720
PENHTADNND RTAIDSRQLR EPSGRVMEEL AVDRNDMVSE DRMAQNNINE GNKEDIPFRQ  780
DISCPQRVVV TPVVNQNCPT NSIEVGSPKG GPGENQGNGA SRNVGSPEGS SAENMIPGLE  840
FVDEARKKAI LRELRKRKAG RALFGIHPEF LIGNLSNLKY FSHQNVCNIA SLGGSKNALI  900
FCNELLSEDE LYDYHPVLWS LRAGNESCYT GVAASAAAAA SDSKPRFEAY NRLQAAAVAF  960
GENLPIPEIV AVGGQSDGKS SLLEALLGFR FNVREVEMGT RRPLVLQMVH DPTALDPRCR  1020
FQEEDSEEYG SPMVLATAIA DLIKQRTESH LRKIQAAVSS KPIVMRAEYA HCPNLTIIDT  1080
PGFVLKAKKG EPESTPEDIL SMVKSLASPP HRLLLFLQQS SVEWCSSLWL DAIREIDPSF  1140
RRTMIVISKF DNRLKEFTER WEVDRYLSAS GYLGDNIHPF FVALPKDRGT ISNEEFRRQI  1200
CQVDIDVLRH LRDNVKGGFN EEKYGPYIGF SCLRKYLESE LQKRYKEAAP ATLALLEQRC  1260
SEVSMELSRL DSKLQGTSDV SQLRRSAMLH AASICTHLRA LLDGAADPAP ELWGKTTEEE  1320
QMHSGIGSWP GINMAVRPPN SSLKLYGGAA FERVMHEFRC ATYSMECPQV SREKVANILL  1380
AHAGRGGNSG LTEAAAEIAR AAARSWLAPL IDTACDRLAF VLQSLFDLAM ERSRNHESKF  1440
HQNVEDMDGY VGFLAALRCS YYKFVKDLSK QCKQIVRHHL DSVTSPYSHI CYENDYLGGV  1500
GSVANSMHRF NHFPGVTSFD LSDSGSALEE AQENMPPKDQ QHMTPPAKGN ESKEVLKESQ  1560
LTVPETPSPD LPVDMHGGKK KDNGNFIDGG ARKRHARMAA YVSRNHHNNV IPGADDLGSK  1620
SGSSYSSICS ISAQYFAKMR EVLIERNVPS ALNSGFLTPC RERLFLALGF ELFAVNDDKF  1680
MDMFVAPGAV DAIQNERQSL LKRQKILLSC LNEFKNISRT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6di7_A5e-20933115127262Putative sorting protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290GGRKEMGGG
2192198AKKRKRG
3193200KKRKRGKP
4846856KKAILRELRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001474G0470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690680.0AK369068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2084N06.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP535722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-67Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain