PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001480G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 258aa    MW: 27623.3 Da    PI: 6.0473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001480G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383.1e-1297142454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  PH01001480G0090  97 SHVEAERQRREKLNRRFCDLRATVPTV-----SRMDKASLLADAAAYIAEL 142
                      89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.10493142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1695161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-1096147No hitNo description
PfamPF000101.2E-996142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1697156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1099148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDELLSPCSS LSPPSLFSPD GHQVLEFTSC EVPEQWLLGD IVVAKNEDDG GLGPVGSSLS  60
PDSELSEMPP SLLASTLRPA KRRGRKPGPR SDGPTVSHVE AERQRREKLN RRFCDLRATV  120
PTVSRMDKAS LLADAAAYIA ELRARVARLE AETRQAAAAR WEPSTASATP LLDEAVEVRM  180
MGRDAAAVRV TTAARHAPAR LMSALRSLEL QVQHACVSRV HGVTVQDVVV DVPAAAAALQ  240
DDDGLRLALL QRLQDSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-2096155766Transcription factor MYC2
5gnj_B2e-2096155766Transcription factor MYC2
5gnj_E2e-2096155766Transcription factor MYC2
5gnj_F2e-2096155766Transcription factor MYC2
5gnj_G2e-2096155766Transcription factor MYC2
5gnj_I2e-2096155766Transcription factor MYC2
5gnj_M2e-2096155766Transcription factor MYC2
5gnj_N2e-2096155766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001480G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876009.11e-115transcription factor MYC2
TrEMBLA0A0E0B5F21e-115A0A0E0B5F2_9ORYZ; Uncharacterized protein
STRINGTraes_5DL_5DA6E1A09.11e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-12bHLH family protein