PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001480G0290

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

TCP

Protein Properties

Length: 245aa MW: 25106 Da PI: 5.8126

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001480G0290	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.1	2.4e-32	31	97	6	72
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 r+ ++hTkv+gR+RR+R+ a caar+ +L++ LG+++d++ti WLlqq++pai ++tgt++ +a + PH01001480G0290 31 PRNRDRHTKVEGRGRRIRMAAACAARVAQLTRDLGHKSDGETIRWLLQQSEPAIVAATGTGTVPAIA 97 6999********************************************************9888833 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-26	33	98	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.904	33	87	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGPTGSHGSV VPKPEPVPVE FLGGLTVAPP PRNRDRHTKV EGRGRRIRMA AACAARVAQL 60 TRDLGHKSDG ETIRWLLQQS EPAIVAATGT GTVPAIATPV DGVLRIPTDG LAPVSAASAP 120 TGGGIPFIAI PAPGSGAAGD GKQQMMPPAA VWMVPQPPGG AGAANQPTHY WAFQTNPELI 180 NFAGAQPINV SNFHHQAFYG AEHLVAGGES QDQHPGGQKA SVVDQPQGEE GDYDGEAMTD 240 SSSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001480G0290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006175	5e-75	AP006175.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0669G04.
GenBank	AP014965	5e-75	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	5e-75	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576745.1	1e-101	transcription factor PCF2
Swissprot	A2YXQ1	5e-50	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	5e-50	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	I1IRY8	1e-100	I1IRY8_BRADI; Uncharacterized protein
STRING	BRADI4G35520.1	1e-101	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	7e-23	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]