PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001487G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 266aa    MW: 28622.6 Da    PI: 9.8348
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001487G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.9e-101061382254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +++  LA+++gL+ +qV++WF N R +
  PH01001487G0210 106 HPYPTDADKHMLATQTGLSRNQVSNWFINARVR 138
                      89*****************************98 PP
2BELL414.6e-141433072
             BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                     +q+v+ssFe v g   a+pY+s  lkaiSrhFr +k  i++qi
  PH01001487G0210  1 MQMVVSSFESVPGQSCATPYASSILKAISRHFRRVKSIISSQI 43
                     9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.5E-9140IPR006563POX domain
PROSITE profilePS5007111.82379142IPR001356Homeobox domain
SMARTSM003891.2E-982146IPR001356Homeobox domain
CDDcd000862.21E-1382143No hitNo description
SuperFamilySSF466891.03E-1784150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2885147IPR009057Homeodomain-like
PfamPF059205.4E-1999138IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MQMVVSSFES VPGQSCATPY ASSILKAISR HFRRVKSIIS SQIQHTSRLL GEELLSLPTC  60
SSGGRAAARS SGLTDQISQP VWRPQRGLPE RAVSVLRAWL FDHFLHPYPT DADKHMLATQ  120
TGLSRNQVSN WFINARVRLW KPMVEEIYML ETRGSANTNA SSDRSNPGAA LSNHTAGPLP  180
PLPPPVAVGG GHHRQQQQML GQYLDAAPPP MDIQVGGGGQ VMMSFGPAAD MGGFGAVSLT  240
LGLRRDVSYR QQQFGCGHIL GDLVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-1688146563Homeobox protein Meis2
3k2a_B3e-1688146563Homeobox protein Meis2
4xrm_A3e-1688146563Homeobox protein Meis2
4xrm_B3e-1688146563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001487G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787381.11e-74BEL1-like homeodomain protein 9
RefseqXP_008787382.11e-74BEL1-like homeodomain protein 9
TrEMBLA0A444ERF31e-77A0A444ERF3_ENSVE; Uncharacterized protein
STRINGXP_008787379.15e-74(Phoenix dactylifera)
STRINGGSMUA_Achr11P07620_0017e-78(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16049811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.15e-54BEL1-like homeodomain 8