PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001487G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 231aa    MW: 24771.6 Da    PI: 4.8133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001487G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-181262155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + ++GVr++  +g+WvAeIr+p   + r +r +lg+f +a +Aa+a++aa+++l+g
  PH01001487G0410 12 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNSALDAARAYDAAARALYG 62
                     679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-311376IPR001471AP2/ERF domain
PROSITE profilePS5103220.561370IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-191470IPR016177DNA-binding domain
PRINTSPR003675.0E-91425IPR001471AP2/ERF domain
PfamPF008475.7E-121462IPR001471AP2/ERF domain
CDDcd000186.51E-161445No hitNo description
Gene3DG3DSA:3.30.730.103.4E-281470IPR001471AP2/ERF domain
PRINTSPR003675.0E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKGKGGPENQ RCPFRGVRQR TWGKWVAEIR EPNRGARLWL GTFNSALDAA RAYDAAARAL  60
YGDCARLNLS AASSPSRPGL QQLRPPHIST AAAAGAAAHD LHLHLQDKPS PPCCSADGAN  120
SNSSVTTGSP TEDNSVHTET VPMNAMQMAM DQEAEEDFEA YVTRLPRAED FGLEGFQEVP  180
LEVLDEAGGG ISIWDLTICP DMMPASTTPP PKHQPDVEVV DNAGLQRLAW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-131469662ATERF1
3gcc_A2e-131469662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001487G0410
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081436e-87AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046236e-87AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054116e-87AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149646e-87AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393756e-87AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126166e-87CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660398.24e-72PREDICTED: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA12e-72DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY936e-70A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-011e-70(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-25ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]