PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001489G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 660aa    MW: 71618.7 Da    PI: 7.7166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001489G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07129150325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      t++C f+a+ G Ck G +C+F H
  PH01001489G0350 129 TRICTFYAQ-GRCKKGKSCTFLH 150
                      89*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-4126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929126153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6129153IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-5129150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MASAGGGVGP GGGLPVKDEI SVADMETMEP PEKEAGRVGL KRVRDSANAK GFIGVTTAEK  60
KPILQPHNNV KFLKKAGNGK LVHPNVDGTS KMGGLYLHGT NGSQTLPYSN ASSSSSPGGN  120
LENKSRKPTR ICTFYAQGRC KKGKSCTFLH EAEGSGSDNR WSTEEKAGVL APVGYGNHRD  180
SEEGSNLEEP QFENLAGSSR DEQYRTLIHA YGEDSRGLIH PVDKHNSTML KVSQGRFCRI  240
DDSWITKSTT PVNELGQIPV VQEKNHEPYF MGCHISLTAD SYLDGRGTFP RLHQDGGKLQ  300
SDVTTGNSIS DSHVSRTYLE PLNPDYRYQP FDSSISLDSL QPNEKLSAYG GTTDNLPQKH  360
HKEHRSSRAS YSAHSLTGCR NPGHDSSDYS LGSPPLRATS HLGMQSLHQL TPDIEKVGLY  420
KDVDFDKGCS TSTPALLVST SPQPAAVSSG HLSPIKDEVW ITSVPFVPSF PGSTSSQYDP  480
LVDSIDPPKI ESVNNLKPSN ISCSISSQHT DENVIVGGNT DKLLNRDDKL ARNTSAKGSN  540
EFAGLIASDR GRSSSLDGDN RVKACERKND AAINNEKTRE FRFHLAEHVK ELVKPIWKEG  600
NLSKDAHKLI VKKSVEKVLA SVEPHQVPAS EELISNYITA SGTKIEKLVK AYVDKHRTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001489G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0A9DUH90.0A0A0A9DUH9_ARUDO; Uncharacterized protein
STRINGOGLUM05G22800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-19C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]