PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001490G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 431aa    MW: 47378.7 Da    PI: 9.0517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001490G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-092913142347
                      -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                       W++Ia++++ gRt++++k++w+++
  PH01001490G0340 291 KWSLIAARLP-GRTDNEIKNYWNTH 314
                      5*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd006912.24E-1573246No hitNo description
Gene3DG3DSA:1.10.520.109.1E-5610141No hitNo description
PRINTSPR004592.4E-1011030IPR002207Plant ascorbate peroxidase
SuperFamilySSF481131.92E-8115249IPR010255Haem peroxidase
PfamPF001412.9E-4818224IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004592.4E-1013146IPR002207Plant ascorbate peroxidase
PRINTSPR004581.3E-263145IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITE profilePS5087317.89231260IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITE patternPS0043603142IPR019794Peroxidase, active site
PRINTSPR004592.4E-1014959IPR002207Plant ascorbate peroxidase
PRINTSPR004592.4E-1016387IPR002207Plant ascorbate peroxidase
PRINTSPR004592.4E-10188106IPR002207Plant ascorbate peroxidase
PRINTSPR004581.3E-2689106IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004592.4E-101107119IPR002207Plant ascorbate peroxidase
PRINTSPR004581.3E-26107119IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004592.4E-101128145IPR002207Plant ascorbate peroxidase
Gene3DG3DSA:1.10.420.107.5E-36142228No hitNo description
PRINTSPR004592.4E-101146167IPR002207Plant ascorbate peroxidase
PROSITE patternPS004350152162IPR019793Peroxidases heam-ligand binding site
PRINTSPR004581.3E-26152167IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004592.4E-101168192IPR002207Plant ascorbate peroxidase
PRINTSPR004581.3E-26176191IPR002016Haem peroxidase, plant/fungal/bacterial
SMARTSM007171.7E-5217317IPR001005SANT/Myb domain
PRINTSPR004592.4E-101220244IPR002207Plant ascorbate peroxidase
Gene3DG3DSA:1.10.10.601.1E-13229236IPR009057Homeodomain-like
PROSITE profilePS500906.69283315IPR017877Myb-like domain
SuperFamilySSF466895.63E-8284320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-13288329IPR009057Homeodomain-like
PfamPF002496.5E-7290314IPR001005SANT/Myb domain
CDDcd001672.99E-6291315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0055114Biological Processoxidation-reduction process
GO:0090378Biological Processseed trichome elongation
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0009506Cellular Componentplasmodesma
GO:0009941Cellular Componentchloroplast envelope
GO:0046861Cellular Componentglyoxysomal membrane
GO:0003677Molecular FunctionDNA binding
GO:0016688Molecular FunctionL-ascorbate peroxidase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAAPVVDAEY LRQVDRARRD LRALISSKGC APIMLRLAWH DAGTYDVSTK TGGANGSIRF  60
EEEYTHGSNA GLKISIDLLE PIKAKNPRIT YADLYQLSGV IAVEVTGGPT IEFIPGRRDS  120
SVCPREGRLP DAKKGAPHLR DIFYRMGLTD KDIVALSGGH TLGRAHPERS GFEGVWTKEP  180
LKFDNSYFLE LLKGESEGLL KLPTDKALLE DPEFRRYVEL YAKDEDAFFK DYAESHKKLS  240
ELGFTPRSSG PASTKSDLST VVVLAQSAVG VAVAAAVVIV GYLYEASKRS KWSLIAARLP  300
GRTDNEIKNY WNTHIRRKLL GRGIDPVTHR PINDASNNPQ PQPQPRGEVH AKPPRCPDLN  360
LDLCISPPCQ AEEEEEPVRV LMKPVKRDCR AASASAASWA SIRERRRQSA SAAATSWGSR  420
LAYSTSEASR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1oaf_A1e-109424417258ASCORBATE PEROXIDASE
1oag_A1e-109424417258ASCORBATE PEROXIDASE
1v0h_X1e-109424417258ASCORBATE PEROXIDASE
2ghh_X1e-109424417258cytosolic ascorbate peroxidase 1
2ghk_X1e-109424417258cytosolic ascorbate peroxidase 1
2vcf_X1e-109424417258ASCORBATE PEROXIDASE FROM SOYBEAN CYTOSOL
2xi6_A1e-10942445246ASCORBATE PEROXIDASE
2xif_A1e-10942445246ASCORBATE PEROXIDASE
2xih_A1e-10942445246ASCORBATE PEROXIDASE
2xj6_A1e-10942445246ASCORBATE PEROXIDASE
5jpr_A1e-109424417258Ascorbate peroxidase
5jqr_A1e-10942445246Ascorbate peroxidase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a key role in hydrogen peroxide removal. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001490G0340
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by hydrogen peroxide in leaves. {ECO:0000269|PubMed:25546583}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936060.0FP093606.1 Phyllostachys edulis cDNA clone: bphylf028h16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132505.10.0uncharacterized protein LOC100193965
SwissprotQ6ZJJ10.0APX4_ORYSJ; Probable L-ascorbate peroxidase 4, peroxisomal
TrEMBLA5JPR20.0A5JPR2_WHEAT; Peroxisomal ascorbate peroxidase
TrEMBLQ94IC30.0Q94IC3_HORVU; Peroxisome type ascorbate peroxidase
STRINGMLOC_6127.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.12e-24myb domain protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Teixeira FK,Menezes-Benavente L,Margis R,Margis-Pinheiro M
    Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome.
    J. Mol. Evol., 2004. 59(6): p. 761-70
    [PMID:15599508]
  3. Teixeira FK,Menezes-Benavente L,Galvão VC,Margis R,Margis-Pinheiro M
    Rice ascorbate peroxidase gene family encodes functionally diverse isoforms localized in different subcellular compartments.
    Planta, 2006. 224(2): p. 300-14
    [PMID:16397796]
  4. Hong CY,Hsu YT,Tsai YC,Kao CH
    Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl.
    J. Exp. Bot., 2007. 58(12): p. 3273-83
    [PMID:17916638]
  5. Hong CY,Kao CH
    NaCl-induced expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings is not associated with osmotic component.
    Plant Signal Behav, 2008. 3(3): p. 199-201
    [PMID:19704658]
  6. Li Z, et al.
    Transcriptional profile of genes involved in ascorbate glutathione cycle in senescing leaves for an early senescence leaf (esl) rice mutant.
    J. Plant Physiol., 2015. 176: p. 1-15
    [PMID:25546583]