PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001498G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 538aa    MW: 59553.9 Da    PI: 6.2783
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001498G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.84.6e-1281685371374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++dl + + l+++l++++s +g+pmqRl ay++e+L arl++s++ lyk+l+++e     sse +++++l++e++P++kf+
  PH01001498G0180 168 LKQVIVACGKAVDDNDLYR-DLLISELRNMVSVSGEPMQRLGAYMLEGLVARLSSSGHALYKSLKCKEPL---SSELMSYMHLLYEICPFFKFG 257
                      578999*******999976.7899*********************************************8...999****************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI eav+ge+ vHiiDf+i qG QW++++qaLa Rp+gpp lRiTg+++++s   +   l  +g+rL+++A++ g+pfefn+ v  + 
  PH01001498G0180 258 YMSANGAIAEAVKGENLVHIIDFQIAQGSQWVSMIQALAVRPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLHSIARSSGLPFEFNA-VPAAS 350
                      *******************************************************8888889999***********************.79999 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++ le+L++++gE++aVn+++qlh+++desv +e++rd++L++vkslsP vv++veqea++n+++F++r +e+l+yy+a+f+++++  pr+++
  PH01001498G0180 351 HEVMLEHLNIRSGEVIAVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPMVVTLVEQEANTNTAPFFHRYMETLDYYTAMFEAIDVACPRDDR 444
                      9999****************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl +aGF+++pls  ++ ++k+ll +++s+ yr+ee++g l+lgWk+r+Lv+ SaWr
  PH01001498G0180 445 TRISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLAMAGFRQYPLSALVNRTIKTLLDNYHSH-YRLEERDGVLYLGWKNRKLVVSSAWR 537
                      *****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.078142518IPR005202Transcription factor GRAS
PfamPF035141.6E-125168537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSTQASNRSY GCPDKSQIPY YSRGSMHGGG NGTYYAQQNH EDLHYVSSDD GSQNGNSNAQ  60
VFQAQYCTLE SSSANCLYPA HGCTSSQCIS GSPLSQQDSH SDHTYGSPPS ASCVTEVPGL  120
KFTTFEELEN AMFGPESDIV SSDSSLLIGS ALHQDNWREL LGINTGDLKQ VIVACGKAVD  180
DNDLYRDLLI SELRNMVSVS GEPMQRLGAY MLEGLVARLS SSGHALYKSL KCKEPLSSEL  240
MSYMHLLYEI CPFFKFGYMS ANGAIAEAVK GENLVHIIDF QIAQGSQWVS MIQALAVRPG  300
GPPYLRITGI DDSNSAHARG GGLDIVGRRL HSIARSSGLP FEFNAVPAAS HEVMLEHLNI  360
RSGEVIAVNF AYQLHHTPDE SVGIENHRDR ILRMVKSLSP MVVTLVEQEA NTNTAPFFHR  420
YMETLDYYTA MFEAIDVACP RDDRTRISTE QHCVARDIVN LIACEGAERV ERHEPFGKWR  480
ARLAMAGFRQ YPLSALVNRT IKTLLDNYHS HYRLEERDGV LYLGWKNRKL VVSSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-581655371375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001498G0180
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649543.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_006649544.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015690825.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLJ3LKW60.0J3LKW6_ORYBR; Uncharacterized protein
STRINGOB03G16920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]