PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001506G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 323aa    MW: 35549.2 Da    PI: 6.2231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001506G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.2e-1582127247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W +eEd+ l ++v+ +G g+W+ + r  g++R++k+c++rw + 
  PH01001506G0290  82 GPWMAEEDKSLREYVEAHGEGNWNQVQRNTGLNRCGKSCRLRWANN 127
                      79*****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3876132IPR017930Myb domain
SMARTSM007177.7E-980130IPR001005SANT/Myb domain
PfamPF002493.2E-1382128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2182142IPR009057Homeodomain-like
SuperFamilySSF466892.97E-2182157IPR009057Homeodomain-like
CDDcd001671.64E-983128No hitNo description
Gene3DG3DSA:1.10.10.601.6E-5143160IPR009057Homeodomain-like
Gene3DG3DSA:3.30.420.402.9E-5197317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEVLSAFSSG LQTRPQSANR NANLLPILKL CVTPTKAEHD TEDTEEAYSR KNTGLLRAAS  60
THAEPFCSSL QSLTRSSPFW VGPWMAEEDK SLREYVEAHG EGNWNQVQRN TGLNRCGKSC  120
RLRWANNLRP DLKTGPFDDE DQRIIERHAM MGNKWAQMAA CELGLLPGSP IGTSLIDAHA  180
GGVGVLESVP DPESKVDSMV PEFWLTEGGQ SAIGALLDYI VENHVAAPLL ANHATSQSVS  240
IYELLNKLLL STSHEQSIPF LSALTQDTHV LLDFHGNRCD LWLDTCIKKH LALLYLATIQ  300
VIAYVTHPIV KHCNAHGHKD VQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gg4_A2e-25149318229441glycerol kinase
3gg4_B2e-25149318229441glycerol kinase
3l0q_A2e-25149318229441xylulose kinase
3l0q_B2e-25149318229441xylulose kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001506G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193851.13e-70FGGY carbohydrate kinase domain-containing protein
TrEMBLN1QZ173e-78N1QZ17_AEGTA; FGGY carbohydrate kinase domain-containing protein
STRINGEMT142984e-79(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.11e-31myb domain protein 120