PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001519G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 149aa    MW: 16019.3 Da    PI: 11.1177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001519G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00054062123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F +   L  H  +H
  PH01001519G0200 40 FQCRTCGRRFATFQALGGHRTSH 62
                     89**********99998888777 PP
2zf-C2H219.92e-0689111123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk+F++   L  H+r+H
  PH01001519G0200  89 HRCDTCGKVFPTGQALGGHMRRH 111
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.05E-1039111No hitNo description
PfamPF139121.3E-93964IPR007087Zinc finger, C2H2
SMARTSM003550.194062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6994067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139122.6E-1488113IPR007087Zinc finger, C2H2
SMARTSM003550.003589111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.22189111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEVATSAQPS PANLLLLLSL SSASKVIAKN SRRVQLDGTF QCRTCGRRFA TFQALGGHRT  60
SHKRPRVRAD GLELLLGARP GKGTARPVHR CDTCGKVFPT GQALGGHMRR HRPVGAVATT  120
WTETTTSSGL SEERDDENEA PITLIQFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001519G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3058662e-48AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCT8333222e-48CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.15e-60zinc finger protein ZAT11-like
TrEMBLA0A2S3IFT91e-58A0A2S3IFT9_9POAL; Uncharacterized protein
STRINGPavir.Ha00194.1.p5e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-23C2H2 family protein