PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001520G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 101aa    MW: 10394.7 Da    PI: 4.176
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001520G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP68.91.6e-212492874
              TCP 28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74
                     +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ s++++   
  PH01001520G0040  2 VAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVSPEEAPpA 49
                     8*************************************8888844431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.483136IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-16246IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MVAARVFQLT RELGHRTDGE TIEWLLRQAE PSIIAATGTG VSPEEAPPAA VPVGSSSAGH  60
GVPFVPVPYY TALLMQPPNA DEPSMPPAAS ASITTAEENN *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001520G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925361e-128FP092536.1 Phyllostachys edulis cDNA clone: bphylf049m10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581062.15e-54transcription factor PCF1
SwissprotO238752e-39PCF1_ORYSJ; Transcription factor PCF1
TrEMBLA0A0Q3E6C71e-52A0A0Q3E6C7_BRADI; Uncharacterized protein
STRINGBRADI5G02880.12e-53(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-19TCP family protein