PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001535G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 253aa    MW: 26377.7 Da    PI: 7.9166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001535G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004380102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ CgksF +   L  H  +H
  PH01001535G0570  80 FKCSVCGKSFGSYQALGGHKTSH 102
                      89********9998888887776 PP
2zf-C2H212.70.00038150172123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k F++   L  H r+H
  PH01001535G0570 150 HKCSICHKEFPTGQALGGHKRKH 172
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.0E-980102No hitNo description
PfamPF139121.7E-1280103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-480103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.32180107IPR007087Zinc finger, C2H2
SMARTSM003550.01180102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576674.0E-9145172No hitNo description
PfamPF139121.2E-12149174IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162150172IPR007087Zinc finger, C2H2
SMARTSM003550.038150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSTASMEALH AAVITEQRHE EEAAVVTTSS SATSGEEGGH LPQGWAKREE NLALCLLMLA  60
RGGHHRVQAP APPPAQVAKF KCSVCGKSFG SYQALGGHKT SHRVKQPAPA AAPLVAPTHV  120
AAFLPPAAED REPATSSTAA SFDSATNRVH KCSICHKEFP TGQALGGHKR KHYDGGVGGT  180
ASSTELLAAA AAAESEVGSS GNGNSTARAF DLNLPAVPEF VWRPCAKGKK MWEDEEEVQS  240
PLAFKKPRLL TA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001535G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939070.0FP093907.1 Phyllostachys edulis cDNA clone: bphylf045a24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.11e-113zinc finger protein 1
SwissprotQ424301e-108ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0D7921e-126A0A0E0D792_9ORYZ; Uncharacterized protein
STRINGOMERI03G31660.11e-127(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-27salt tolerance zinc finger