PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001551G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Nin-like
Protein Properties Length: 201aa    MW: 21883.8 Da    PI: 8.3823
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001551G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.7e-26959252
           RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                     + ++ l+ l++yF++++k AAk++gvc+T+LK iC q+GI+RWP+Rkik++
  PH01001551G0070  9 QRNVCLSILQQYFAGSLKHAAKSIGVCPTTLKSICQQHGISRWPSRKIKKV 59
                     56888999*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.084179IPR003035RWP-RK domain
PfamPF020421.4E-231159IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MERENAAQQR NVCLSILQQY FAGSLKHAAK SIGVCPTTLK SICQQHGISR WPSRKIKKVN  60
RSLKEIQNVI SSVQGVEGVL KYDPATGCLV SSVSPSEEPS IMDVENKGSD PLPIESNFSH  120
LKFKPDCDAH QREHLGQDVL LKVQKGKISE IDLNLNHGGL FLNSHSARKS NSPLCQDASN  180
GSYVIKEMTN AATTDVDRGS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001551G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616880.16e-86protein NLP2-like isoform X1
RefseqXP_015616881.16e-86protein NLP2-like isoform X1
SwissprotQ0JC272e-35NLP2_ORYSJ; Protein NLP2
TrEMBLA0A0E0BHI93e-85A0A0E0BHI9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BHJ03e-85A0A0E0BHJ0_9ORYZ; Uncharacterized protein
STRINGOGLUM11G08660.35e-86(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.26e-37Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]