PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001552G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 1172aa    MW: 130438 Da    PI: 6.6785
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001552G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.21.7e-541382533117
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfrkDG+ w++kkdg+ v E+he+LKvg++++l+cyYah+e+np fq
  PH01001552G0210 138 KEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRKDGHAWRRKKDGRNVGEAHERLKVGNIDALSCYYAHGEQNPCFQ 231
                      5669****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylev 117
                      rrc+w+Le ++e+ivlv+y+ev
  PH01001552G0210 232 RRCFWMLEPAHEHIVLVQYREV 253
                      ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.333133259IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-68136254IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-46139252IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.38E-14599682IPR014756Immunoglobulin E-set
PfamPF018333.1E-5600676IPR002909IPT domain
Gene3DG3DSA:2.60.40.102.4E-6600690IPR013783Immunoglobulin-like fold
CDDcd002044.48E-10767889No hitNo description
Gene3DG3DSA:1.25.40.205.0E-16779890IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.03E-15795891IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.486797889IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-6814890IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4E-4830859IPR002110Ankyrin repeat
PROSITE profilePS5008810.927830862IPR002110Ankyrin repeat
SMARTSM002483700869898IPR002110Ankyrin repeat
SMARTSM0001513950972IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.565952980IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.17E-79551054IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.310061028IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.09610071036IPR000048IQ motif, EF-hand binding site
PfamPF006120.03210091027IPR000048IQ motif, EF-hand binding site
SMARTSM000153.4E-610291051IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.4210301058IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-510311051IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1172 aa     Download sequence    Send to blast
MGVRVASVAR RVLQARSEVR QRGYAWLSPT GAARRRSDRA VLGCVWAPAE ACAHMVTGAG  60
STVRGRVYQR LDEDERPQQN DRSWYQNGLL PSQVLMKTKE ASELFLAVLD PSFHGSLEPA  120
GSLQVTMSQS FDINVLRKEA RSRWLKPSEV YYILQNHERF PITPEPPKKP PSGSLFLYNR  180
RVNRYFRKDG HAWRRKKDGR NVGEAHERLK VGNIDALSCY YAHGEQNPCF QRRCFWMLEP  240
AHEHIVLVQY REVAEGRYYS ASLSNGPTES LSALSYPNAI YGNQYHGSTS GGSEGGESRQ  300
SYSNLSSITE VSSYSANKEY NKDSGTLLSI PEFDQTTTMG APELGQTSLE RTTEVCQADN  360
SNSTNKSGLN IALKKIAEQL SLGDDDDDYI YLNQAQPLDF VTNIEAADRQ GNHTSSRLGK  420
ASGDNQAKLI RAEGMQNGLG RGISPSWEDV LQSSSGLPAS SIYQPHRSVL TPCILHEQSG  480
AQYQQNSEYQ PPGGLDNSDL RLQLSAAKRF LLGPEDSIDS PSYNFIPRDE GNNGIDTLSA  540
HDSSLQSCLN PDWKRTTPQT LQSNSYGSEI SEFLLDHGQF ESSSGADTRL SLAQKQRFNI  600
HEISPEWAFC YEITKVIITG DFLCDPSNSY WAVMFGDSEV PVEIVQPGVF RCHTPLQSSG  660
KRTLYITSGN REVCSEVKDF EFRAKPTVSG FTDLAPLSRS LKSSEELLLL AKFARMLLCE  720
YGSSVVSNGD PQSGQCPKLK MNDDHWQRLI DELKVGCNNP FSMTDWIMEE LLKSKLQQWL  780
SVNLQGCDGT ACSLSKHEQG IIHLISALGY EWALPSVLSA GVGINYRDSN GWTALHWAAY  840
FGREKMVAAL LAAGASAPAV TDPTAQDPVG KTAAFLASER GHMGLAGYLS EVSLTSYLAS  900
LTIEESDISK GSAAVEAQRA VESISQRSAQ LYGGTEDELS LKDSLAAVRN VSQAAARIQN  960
AFRAFSFRKR QQKVTRLKDE YGMTQEDIDE LAAASRSYYQ YHASNGQNKA AVSIQKKYKG  1020
WKGRKNFLNM RRNVVKIQAH VRGHQVRKKY KTFVSTVSVL EKVILRWRRK GHGLRGFRAE  1080
QPAMIEAEDE EEEDDDDFVD DEAVKIFRRQ KVDESVKEAV SRVLSMVDSP EARMQYRRML  1140
EEFRQATAET SDGATSILNN DLLIGIDNFM N*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001552G0210
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0920760.0FP092076.1 Phyllostachys edulis cDNA clone: bphyem212e23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652212.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG21e-164CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0D9W4850.0A0A0D9W485_9ORYZ; Uncharacterized protein
STRINGLPERR04G07320.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-146Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]