PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001554G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 215aa    MW: 23542.9 Da    PI: 6.5075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001554G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08143183954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PH01001554G0110 143 ARLRRERISERIRVLQQLVPGG-----TKMDTASMLDEAIHYVKFL 183
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14138193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6144183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-6156188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDFDLLNSCP EAQLELMNTM LQLEQVLTDQ SLMAATSPPI SPMQTPGYHF SPPPHMSTCT  60
TTTAGYQDQY SVPAAYAGTG VHQEYVMSPG FDACAGALQG SEAMREMIFH IAALQPVNID  120
PETVRPPKRR NVRISKDPQS VAARLRRERI SERIRVLQQL VPGGTKMDTA SMLDEAIHYV  180
KFLKSQVQSL ERAASASGAA LGVAYPTAQL QHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129RPPKRR
2143148RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001554G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922080.0FP092208.1 Phyllostachys edulis cDNA clone: bphyem204g02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177668.14e-89transcription factor HEC1-like
TrEMBLA0A3B6KK441e-88A0A3B6KK44_WHEAT; Uncharacterized protein
STRINGMLOC_16429.12e-82(Hordeum vulgare)
STRINGTraes_5BL_DDC2491F7.12e-82(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-41bHLH family protein