PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001555G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 879aa    MW: 97811.1 Da    PI: 6.6164
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001555G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.3e-181331983099
                      ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  +++++f  +++++r+
  PH01001555G0390 133 PA--QELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQF--LLGIRRA 198
                      33..48************************************************6665666..9999997 PP
2Auxin_resp118.55.3e-39223306183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  PH01001555G0390 223 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDGVRWPNSHWRSVK 306
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.3E-11116199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-27126212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-26126226IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-16132198IPR003340B3 DNA binding domain
CDDcd100175.87E-13135197No hitNo description
PROSITE profilePS5086311.378136199IPR003340B3 DNA binding domain
PfamPF065075.6E-34223306IPR010525Auxin response factor
SuperFamilySSF542771.67E-7737822No hitNo description
PfamPF023092.2E-8739830IPR033389AUX/IAA domain
PROSITE profilePS5174523.273746830IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MAAILRPRHR HGEPALPPSA HTVGPIRCPF ARTVCAEEQT CLNSELWHAC AGPLVSLPAV  60
GSRVVYFPQG HSEQVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT  120
LQPLNPDFTQ QPPAQELMAK DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  180
VLFIWNDNNQ FLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAASTN SRFTIFYNPR  240
ASPSEFVIPL AKYVKAVYHT RISVGMRFRM LFETEESSVR RYMGTITGIS DLDGVRWPNS  300
HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYTSPFQ LRLKRPWPTD LPSLHGGKDD  360
DLTSSLMWLR DSANPGFQSL NFGGLGMSPW MQPRLDASLL GLTPDMYQTI AATAFQDPTK  420
QVSPTILQFQ QPQNMVGRAA SLLPSQILQQ VQPQFQQQPY LQSINETTIQ GQAQSEFLQQ  480
QLQRCQSFNE QKPQLQPHQH QQESQQQQQS QCMQVPQHPQ MQRQKNMGNY QSVSNALSAF  540
SRLPSPPQSS PMTLQTVLPF SQPQSFSDTN MSSLSPSNAS TIHNTLRPFS SEAASHLSMP  600
RPTAIPVPDP WPSKRVAVES LLPPRPQVTS QIEQLDSTPP SIPQSSALAP LPGRGCLVDQ  660
DGNSDPQNHL LFGVNIDSQS LLMQGGIPSL HSENDSTAIP YSTSNFLSPS QNDFPLDQTL  720
NSSGCLDESG YVPYSQNSDQ VNRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF  780
GLEGQLEDPL RSGWQLVFVD REEDVLLVGD DPWQEFVNSV SCIKILSPPE VQQMGKQGLE  840
LLSSAPTRRL VSSCDDYVSR QESRSLSTGI ASVGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1254232751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001555G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656378.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLJ3MGU80.0J3MGU8_ORYBR; Auxin response factor
STRINGOB06G32420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]