PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001557G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 198aa    MW: 20747.4 Da    PI: 9.0526
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001557G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-1790126135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  PH01001557G0370  90 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 126
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-884137IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-1188134No hitNo description
Gene3DG3DSA:3.30.50.103.7E-1489128IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.02E-1589138No hitNo description
PfamPF003201.1E-1490126IPR000679Zinc finger, GATA-type
PROSITE patternPS00344090117IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTGLGMADGG SYPQEAAVAD LQQDQAATRS NSGGYPSPLH LLSTLSPSIY GFAPFWGSDR  60
VPQRIRSRAN PESDRVIQIG VRRWLPRIRC QNCGTSEKMT PAMRRGPAGP RTLCNACGLM  120
WANKGTLRSC PKANVEAPLV TIERSNAAVS QSKSGTDNKA LVAPNNDIVA ASNVEAMGES  180
GPANAAAIEG APKAQLE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001557G0370
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547462e-67AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313633.12e-51GATA transcription factor 18 isoform X3
SwissprotQ10F253e-45GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A3B6HYZ31e-47A0A3B6HYZ3_WHEAT; Uncharacterized protein
TrEMBLA0A446RQE02e-46A0A446RQE0_TRITD; Uncharacterized protein
STRINGTRIUR3_15386-P13e-46(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-21ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]