PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001562G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 300aa    MW: 33395.2 Da    PI: 7.1605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001562G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-081902221955
                      HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++e LrellP++    ++K +Ka+ L +++eYI+ Lq
  PH01001562G0090 190 RLEILRELLPHC----DQKRDKASFLLEVIEYIRFLQ 222
                      6899*******9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.864171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-10187231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-7190226No hitNo description
PfamPF000101.1E-5190222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-12191232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MYVARETWRG ESVYKLLKIQ PDKQAGEEPT DDFLSLHTGG SSSPFQHRDT QHSSQAAGYR  60
FGVHNSMKPL KLAKQRNSNG AAGNAVDGAT GVASSGLEAD SEEHVLPGGV GTFSIRQASD  120
TLLREEAGSH GIVRGAFLPV LHGSRMENAH ETGSGSRAHR AQSMMWQDSG IDQRSIEICF  180
KRYLFMFSFR LEILRELLPH CDQKRDKASF LLEVIEYIRF LQEKVQKYES ADPERNHEDS  240
KSMPWTKVYY RSFWRNTQND SQVQGGDLSA PAQDMNKEQC GSKHITVAPA APFSIQSVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001562G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0930911e-137FP093091.1 Phyllostachys edulis cDNA clone: bphyem210n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689641.11e-119PREDICTED: transcription factor BIM1-like isoform X3
TrEMBLA0A0E0NKE01e-120A0A0E0NKE0_ORYRU; Uncharacterized protein
STRINGORUFI02G32620.11e-121(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-18BES1-interacting Myc-like protein 2