PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001571G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 486aa    MW: 52112.1 Da    PI: 8.2135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001571G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12294338554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + Er+RR+++N++f+ L+ +lP+       K +K +iL +A eY++sL
  PH01001571G0100 294 HVISERKRREKLNDSFHALKAVLPPG-----SKKDKTSILIRAREYVHSL 338
                      8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15287355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-13288342No hitNo description
PROSITE profilePS5088814.475289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15293357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9294338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00268330358No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDSSSCWFHG YTNNTTAGNN GVMFGYAARV SVLAVAKCIY ISYMADQLRA LCTRMQLRPR  60
GVAVQGGGGT AAQLTDSEPL EPGKNSLINS SMHAHYQITQ PCHRTREISM CMNMDDEPVY  120
LPSSNGTAKL KDSMVDDFLP SLHAGSCFTS SSTSSSLRSA SLSCSPESSA HVLTAPAATA  180
GCQYPEVSSR VPLAPGVPYG HGQYTNLHVP TPAVQHDTAA MAPELPATGA FKRYARHLAP  240
RRPLKPGACG QGMFKRAMSV LAKMHMSMRY SRQYDNQEAA AAAPPPPSEN QLQHVISERK  300
RREKLNDSFH ALKAVLPPGS KKDKTSILIR AREYVHSLKS KVCELEEKNQ ALESRLARRA  360
GTGAGEGNAD ADAGENVEIE ITRAAAAEEE PRELCTVRIA VRSACVNATD VVLRTLQCLK  420
DQMGNDVRLV AMSTSGGGSP QANLTLQLKS TPGVKWEEES VKEAVAKVVA DALPPSQSTE  480
TSCLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302ERKRRE
2298303RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001571G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565458.11e-122putative transcription factor bHLH041
TrEMBLA0A0Q3JXG21e-120A0A0Q3JXG2_BRADI; Uncharacterized protein
STRINGPavir.Ea00369.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-22bHLH family protein