PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001575G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 303aa    MW: 31344.5 Da    PI: 9.992
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001575G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08103128227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +     Ck Gd+C+FaHg+
  PH01001575G0100 103 KTRLCNKYNTAEGCKWGDKCHFAHGE 128
                      8***********************96 PP
2zf-CCCH34.82.8e-11268293127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  PH01001575G0100 268 FKTKLCENFTK-GSCTFGDRCHFAHGE 293
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.13562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0333563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-53662IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-63760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-1399131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8100132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.069101128IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-5103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.11E-14163242IPR004088K Homology domain, type 1
SMARTSM003222.2E-9171241IPR004087K Homology domain
PROSITE profilePS5008414.823172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-14172240IPR004088K Homology domain, type 1
PfamPF000131.1E-10174238IPR004088K Homology domain, type 1
CDDcd001051.34E-12174236No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-16265298IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8267293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-9267297IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEGGGRKRGK PDGANGASAG GKRARESESF QTGVGSKSKP CTKFFSTSGC PFGEGCHFLH  60
YFPGGYQAVA KMTNLGGPAL APPPVRMPMG PAVPDGPSTP TVKTRLCNKY NTAEGCKWGD  120
KCHFAHGERE IGKPMLTDSS MPPPMGPRPT GHFAPQPMPN PGMATPASFG ASATAKISVD  180
ASLAGAIIGR GGVNTKQISR VTGAKLAIRD HESDTSLKNI ELEGSFDQIK NASTLVRELI  240
VSISGNAPPP AKHPAGGSHR GGGPGSNFKT KLCENFTKGS CTFGDRCHFA HGENELRKSA  300
AA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001575G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423410.0AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626985.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R00.0C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0E0JWR40.0A0A0E0JWR4_ORYPU; Uncharacterized protein
STRINGOPUNC02G06300.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-71C3H family protein