PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001577G0130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 473aa    MW: 50447 Da    PI: 7.1072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001577G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.14.2e-941124712374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      v++L e+A++ ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+ +++   ++l++ ++++ ++  +l a+k+fsevsP+l+
  PH01001577G0130 112 VDQLAEAAKHAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRVALSTTGD---ASLASAASTPVDVLLKLGAYKAFSEVSPVLQ 202
                      689*************************999555566*******************9444...445666677778******************* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+t+ qa+l+++ g+ ++H++Dfdi+ G QW++L+q+La+R+   + l++T+++s +s++  el+ ++e+L++fA elgvpf+f v+   +l
  PH01001577G0130 203 FAHFTCVQAVLDELGGAGCIHVLDFDIGVGEQWASLMQELAQRRP-GAALKVTALVSTASHHPLELQLIHENLSNFAMELGVPFQFAVF---NL 292
                      ******************************************965.589***************************************8...67 PP

             GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +++++ +L ++  g a+aV+l +   +          + ++vL+l+++l +k+v+ v++ +d+++ +F++++++a++ y+ l++sl+a  +++s
  PH01001577G0130 293 ATMDPTDLlAIAGGNAIAVHLPVGSVHAS--------AVPSVLHLIRRLGAKLVISVDRSSDRSELPFAAHLFQAFQSYVFLLESLDAV-GTDS 377
                      7776665527788**********888886........4556*********************************************998.89** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++++k+Er+l++++i+n+v  ++++      ++  Wr ++ +aGF p+++s++a++qa++ll+kv+++g+rve++ gsl+l W++ +LvsvSaW
  PH01001577G0130 378 DAASKIERFLIQPKIENCVVRRHRA-ATAGDKMLPWRTMFASAGFVPMQISSFAEAQADSLLKKVPVRGFRVEKRAGSLLLHWQRGELVSVSAW 470
                      ************************9.66677799************************************************************ PP

             GRAS 374 r 374
                      r
  PH01001577G0130 471 R 471
                      8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.81185451IPR005202Transcription factor GRAS
PfamPF035141.5E-91112471IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEHPVLDLDH IPSMLPQPPM VGPNLPFPPP VEDTKPASFG PTPGHHHPHA AFHRAFPSYD  60
TAPPPPKRQH PMAEASTPKL PPFAGHAAAA GGFVPALKPK AEAASDDTAA AVDQLAEAAK  120
HAEAGDAFGA REILARLNYR LPAAPTAGTP LLRSAFYFKE ALRVALSTTG DASLASAAST  180
PVDVLLKLGA YKAFSEVSPV LQFAHFTCVQ AVLDELGGAG CIHVLDFDIG VGEQWASLMQ  240
ELAQRRPGAA LKVTALVSTA SHHPLELQLI HENLSNFAME LGVPFQFAVF NLATMDPTDL  300
LAIAGGNAIA VHLPVGSVHA SAVPSVLHLI RRLGAKLVIS VDRSSDRSEL PFAAHLFQAF  360
QSYVFLLESL DAVGTDSDAA SKIERFLIQP KIENCVVRRH RAATAGDKML PWRTMFASAG  420
FVPMQISSFA EAQADSLLKK VPVRGFRVEK RAGSLLLHWQ RGELVSVSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2914347132375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001577G0130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-177CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194385.10.0scarecrow-like protein 6
TrEMBLA0A0A9H9V70.0A0A0A9H9V7_ARUDO; Uncharacterized protein
STRINGBRADI1G78230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-88GRAS family protein