PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001584G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 443aa    MW: 48332.7 Da    PI: 7.9634
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001584G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-083764082254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+ +LA ++gL+ +q+++WF N R +
  PH01001584G0050 376 HPYPNDNEKLRLAVSTGLSRSQISNWFINARVR 408
                      89*****************************88 PP
2BELL651.5e-21230293972
             BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      ++kLlsll e++ r+++y  +l  v+ssFe + g g+ + Ytsl  +a+SrhF +L+ ai  ++
  PH01001584G0050 230 QTKLLSLLSELESRHEHYFRELSRVASSFEPALGAGATAGYTSLVAQAMSRHFGNLRRAILRKL 293
                      59**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-14156291IPR006563POX domain
PfamPF075262.5E-26161289IPR006563POX domain
PROSITE profilePS5007111.467349412IPR001356Homeobox domain
SMARTSM003898.7E-10352416IPR001356Homeobox domain
CDDcd000861.07E-11352413No hitNo description
Gene3DG3DSA:1.10.10.609.5E-26357418IPR009057Homeodomain-like
SuperFamilySSF466896.42E-17358420IPR009057Homeodomain-like
PfamPF059207.1E-17369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEYISAVLKL CLCVVYMHVG IGIGLSTYYL LLLALPPSVT RPSAKVTSLN FFIGTIISRP  60
QLDMVTKHLQ KSSPKQVPKK KPVTQNANGT QQCSHCHQPA PVDAAPPGRS PAHREERHQP  120
DGSSGSTGPL VLTLGSAADR RSHCCCSCGV APAPAPAMTS VLRGSRYLRP AQELLREAVS  180
MGEAGDANAG GNDEAKKHGQ LEASALQEMC LQAATNCPFH GRDNDRGGVQ TKLLSLLSEL  240
ESRHEHYFRE LSRVASSFEP ALGAGATAGY TSLVAQAMSR HFGNLRRAIL RKLRLHAAAA  300
ARRSASMLRE DEEGEDDYDD DEEAALPVTE DMVHKVVRRK KQTAAARAEQ VWRPLRGLPE  360
DSVAVLRAWL FDHFLHPYPN DNEKLRLAVS TGLSRSQISN WFINARVRLW KPMIEEMYND  420
EFSEDSVSVS RDDMSGGASS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-16358416563Homeobox protein Meis2
4xrm_B7e-16358416563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001584G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149612.14e-95BEL1-like homeodomain protein 3
TrEMBLA0A446RQ901e-102A0A446RQ90_TRITD; Uncharacterized protein
STRINGTraes_4BS_57F165BB1.11e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-37BEL1-like homeodomain 11