PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001597G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 393aa    MW: 44109.3 Da    PI: 10.2854
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001597G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.82.8e-31260316158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e +kk   k+rkpylheSRh+hA+rR+Rg gGrF
  PH01001597G0410 260 EEPVYVNAKQYHGILRRRQSRAKAELKKKA-VKTRKPYLHESRHQHAMRRARGIGGRF 316
                      69************************9999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.9E-35258319IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.896259319IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-27261316IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-24262284IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860264284IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-24293316IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGGWIGGGEL QLLSRVAAAD WDRCNFCRLK QRGPEPRSKA VSKYEWYGIT AGGIQPGGAE  60
RAGRAAIWHG NATVVDGLRA WGGVPGCCGA GKRSRDQLIE QSSRWWWWCH QMLSEKDERR  120
YERGEQRGFT EIRGTKSLSD SENHRIVLGF FCKTCQAVKV AFDKDGSASQ EKHHTTSQMP  180
ALVSDYLAPY SQLELNQPIA SATYQYPDAY YTGMVGPYGT QAVFHCPELA AFFVVRTPQT  240
HFQLPGLTHS RMPLPLEISE EPVYVNAKQY HGILRRRQSR AKAELKKKAV KTRKPYLHES  300
RHQHAMRRAR GIGGRFLNTK KNENGSPNEK AEPNKGNTVL NATWVHESIP VSVSWLLHAV  360
IVVKFEGNLS VGKEVFKRPP RFSPIKRKLV PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19260328268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001597G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880301e-100AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0698541e-100AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470121e-100EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-38nuclear factor Y, subunit A9