PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001601G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 334aa    MW: 35824.6 Da    PI: 6.0441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001601G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.9e-33187244259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers++dp++v++tYeg+H+h+
  PH01001601G0220 187 EDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSQQDPSTVITTYEGQHTHP 244
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-34171245IPR003657WRKY domain
SuperFamilySSF1182902.09E-28178244IPR003657WRKY domain
PROSITE profilePS5081129.275181246IPR003657WRKY domain
SMARTSM007743.5E-38186245IPR003657WRKY domain
PfamPF031062.8E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MHSMSGAGGG GGGGDHGLYG DQPAAGFVPF EHGDVDNFFF QRSACAGGEG GGAGGDDGLT  60
PYSSITDYLQ GFLDPVGLAR HFDASCPLGD AAVKQEMVLA DASHDGHDLQ AGGAAPVTPN  120
SSVLSSSSEV AGEDEPRRCK KGREEEEIDE EGPADQNCRS KAKKKGEKKP REPRVAFMTK  180
SEVDNLEDGY RWRKYGQKAV KNSSYPRSYY RCTAPRCGVK KRVERSQQDP STVITTYEGQ  240
HTHPSAVNHR GMSARMLMPN DSYSFAAPAP ALQLGFCPDL AARVTNQQVD YAHMYMPSVP  300
AAAPPMALLQ EHRFADYSLQ DPVPSVMGNH HEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26177243874Probable WRKY transcription factor 4
2lex_A1e-26177243874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001601G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095684e-98AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence.
GenBankAY8706004e-98AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655633.12e-89PREDICTED: probable WRKY transcription factor 4
TrEMBLA0A3L6F9V23e-87A0A3L6F9V2_MAIZE; Putative WRKY transcription factor 71
STRINGOPUNC05G24790.12e-86(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.19e-42WRKY DNA-binding protein 28