PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001609G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 174aa    MW: 18527 Da    PI: 9.8362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001609G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192574255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+++t+ eAa a+++a+ +l+g
  PH01001609G0410 25 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVEAALAYDRAAVALRG 74
                     7********.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.99E-302481No hitNo description
SuperFamilySSF541718.5E-222582IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-302582IPR001471AP2/ERF domain
SMARTSM003803.9E-342588IPR001471AP2/ERF domain
PROSITE profilePS5103221.5492582IPR001471AP2/ERF domain
PfamPF008471.5E-122574IPR001471AP2/ERF domain
PRINTSPR003679.0E-102637IPR001471AP2/ERF domain
PRINTSPR003679.0E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRGDQGSGCG GGGERAGGGG RVEAHYRGVR KRPWGRYAAE IRDPWKKTRV WLGTYDTPVE  60
AALAYDRAAV ALRGSKARTN FGSDHSRGHL PHLQPCLPPR PAHAPSPFGG LDVSHPSPWH  120
FIYCPATLQV MAPPGPVAGE FAASLPSTVL ELRTGPRSLP FDLNEPPSLL FGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-212581562ATERF1
3gcc_A9e-212581562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001609G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085234e-84AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423934e-84AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149614e-84AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-84CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288804e-84CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141110.16e-68uncharacterized protein LOC100273194
TrEMBLB4FTI21e-66B4FTI2_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G066158_P012e-67(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-23ERF domain protein 12