PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001626G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 700aa    MW: 75338.5 Da    PI: 6.2086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001626G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32285341259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGq +vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g+Hnh+
  PH01001626G0320 285 EDGYNWRKYGQQQVKNSEHPRSYYKCTHPKCPVKKKVERSQ-DGQITEIIYKGTHNHP 341
                      8****************************************.***************7 PP
2WRKY104.84.8e-33500558159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  PH01001626G0320 500 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 558
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-29280343IPR003657WRKY domain
SuperFamilySSF1182906.67E-26283343IPR003657WRKY domain
SMARTSM007742.0E-34284342IPR003657WRKY domain
PROSITE profilePS5081122.607285343IPR003657WRKY domain
PfamPF031064.6E-25285341IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37485560IPR003657WRKY domain
SuperFamilySSF1182907.45E-29492560IPR003657WRKY domain
PROSITE profilePS5081137.539495560IPR003657WRKY domain
SMARTSM007744.0E-38500559IPR003657WRKY domain
PfamPF031062.8E-25501558IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MAGSRNRGSL MENWMPPTPS PRTLMSSFLN EEFSSGPFSS IFSEHGSNKP QDQSEKSRQL  60
VDLSEEVPAQ SAKTTFQKDI SLEPNLFNSN QKSNSHSGLA ERMAARAGFS IPKIDTSRVG  120
SSTVIRSPVA IPPGLSPTTL LESPVFLYNA TAQPSPTTGK LPFLMATNAK STIPPAAKMT  180
EDCAFGNDVF SFQPHLGSKA PSFSTVEKGY DACHQYQSLS NIHQQESSLQ SSFTAVNDTT  240
DETIVKPKTS DSMFGDNHSS ADEEEDDETN QNGEYSSAAI GTPAEDGYNW RKYGQQQVKN  300
SEHPRSYYKC THPKCPVKKK VERSQDGQIT EIIYKGTHNH PLPPPNRRSG VPFSHMNDPQ  360
INVIENPGLQ AGLTSASLWE NAKNGCLQDV QSDGVEARPA ACFPVSAYGD TSIMESQDAV  420
DVSSTLSNEE DEGVTPGTIS IDCDADEDET ESKRRKLDAL ATATITTAAA NSTIDMGAAA  480
SRAVREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG CSVRKHVERA  540
SHDLKSVITT YEGKHNHEVP AARNSGHGSS GSGSAPPSAP HANSSQHREE PQVSFAQFGG  600
TAPFGSFVFP PRGQLGPAAG NFHFGIVPPG MPIPMPALGS LAPTKMIGHP STMQGYPGLM  660
MPEGELKTEP GPQSGFPAVN AASSAYQQMM NRPPFGHLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37285561878Probable WRKY transcription factor 4
2lex_A5e-37285561878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001626G0320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238285.10.0probable WRKY transcription factor 2
TrEMBLA0A0D9XEY20.0A0A0D9XEY2_9ORYZ; Uncharacterized protein
STRINGLPERR09G10410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-128WRKY DNA-binding protein 2