PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001633G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 336aa    MW: 36522.1 Da    PI: 8.2085
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001633G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.21.5e-14261286126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +  tG C+yGd+C+FaHg
  PH01001633G0030 261 FKTELCNKWEDTGACPYGDQCQFAHG 286
                      79***********************9 PP
2zf-CCCH19.91.3e-06299324126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykte Cr  +++  C+yG rC+F H+
  PH01001633G0030 299 YKTEVCRMVLAGDVCPYGHRCHFRHS 324
                      9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-18257293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-10258292IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-9260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591260288IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-12261286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11294324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8295325IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188298326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MQEALVSPAN ADRLRSAFEL RPFAFGDQRL SSSPRYLPSG DDALYRCSSP FSPSFGFSSP  60
SPLATSVSLS PSSSASLLDD GDDGGAADAT SQRLQLARLA LQYQEVADRY ELCLSHLAEA  120
VDDAAALRRE NAELRIANSD LARRLALLSG KQTAAVAIAD EIRRLRLGEQ KAAAVAATKE  180
RTPEKLSVLP KSISVRSNGY LKMNQPAQAA ATPAAHNRKP RVSNPTNPSS HRAYVGADVG  240
KKGDDQKEQG AELEVYDQGM FKTELCNKWE DTGACPYGDQ CQFAHGVAEL RPVIRHPRYK  300
TEVCRMVLAG DVCPYGHRCH FRHSLTPTER LLLRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-23261324467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001633G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957550.0FP095755.1 Phyllostachys edulis cDNA clone: bphylf030c20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.11e-168zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-148C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6N61e-169A0A287L6N6_HORVV; Uncharacterized protein
TrEMBLF2D9I21e-169F2D9I2_HORVV; Predicted protein
STRINGMLOC_5666.31e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-54C3H family protein