PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001634G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 351aa    MW: 38293.4 Da    PI: 7.1004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001634G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-212878155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+fgtae+Aa+a++aa+++++g
  PH01001634G0140 28 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFGTAEGAARAYDAAALRFKG 78
                     68********.**********64....55***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.45E-242888No hitNo description
PfamPF008472.0E-142878IPR001471AP2/ERF domain
PROSITE profilePS5103225.1592986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-322987IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-212987IPR016177DNA-binding domain
SMARTSM003802.4E-342992IPR001471AP2/ERF domain
PRINTSPR003675.3E-113041IPR001471AP2/ERF domain
PRINTSPR003675.3E-115268IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.510.101.8E-5188321No hitNo description
SuperFamilySSF561122.86E-6218326IPR011009Protein kinase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDSVLHQQSV PPPATLEQHQ QQRGAERPRY RGVRQRPWGK WAAEIRDPVK AARVWLGTFG  60
TAEGAARAYD AAALRFKGSK AKLNFPDDAR NILQLPSHQP AATSSSTPQR RPRAAAHTQT  120
TTPAATAGTA AEFPDLRRDC IQIISVVAFA KDLYSDSVLE RETVACLREL HEIKLVPKYM  180
AYPPVDLLSS KHLTQSASEN ALTKVDTDLC ICSPAARYAQ YGDVSPKVDA YAFGVVLYEL  240
ISAKEAIVRS TESASDSKGL VYLFDEALTT PDPKEGLGKL IDSGLGEDYS MDSILKFRRD  300
TKASTQDDPK LRPTMISAVG ALMMLSSTSE FWDMNNLCEN QGLVNLMSGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-213086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-213086663ATERF1
3gcc_A2e-213086663ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001634G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939960.0FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-25ERF family protein