PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001653G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 353aa    MW: 38858.4 Da    PI: 10.2298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001653G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07541341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W+++E e ++ a +++G++ W+++a  +   Rt +++ 
  PH01001653G0210  5 QWSKDELECFYGAYRKYGKD-WRKVAGSVR-DRTSEMVE 41
                     6*****************99.*********.***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-9350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-5544IPR009057Homeodomain-like
PfamPF002492.5E-6545IPR001005SANT/Myb domain
CDDcd001679.08E-5640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLGSQWSKDE LECFYGAYRK YGKDWRKVAG SVRDRTSEMV EALYNMNRAY LSLPEGTATA  60
AGLIAMMTDH YNILDESNSD RESNDSPETS RKPLKRGRAK FQSLSKTSDT CYPDLLQSQP  120
ASSSYGCLSL LKKKRSGGNR PRAVGKRTPR VPVASMYHRD DKINSAKRQA KPDANNGDDE  180
GAHVAALALA EVCQRGGSPQ VSRTPGKSGD RMFLSPLKST DKKNADSEMG SSKLHGFHVD  240
ADYPEGSLGS REAETGDFPK DAPFLMNNEG SASGKSRQKV KRSQRRRKKA ARKTVDRFED  300
DREACSGTEE GHSARKTKDE SEVGALGKKS SWPSKKSNKR SRQLFFGGMS VF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276288RQKVKRSQRRRKK
2279285VKRSQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001653G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631926.10.0protein ALWAYS EARLY 2 isoform X1
RefseqXP_015631931.10.0protein ALWAYS EARLY 3 isoform X5
RefseqXP_025879733.10.0protein ALWAYS EARLY 2 isoform X4
TrEMBLA0A0E0KGN00.0A0A0E0KGN0_ORYPU; Uncharacterized protein
STRINGOPUNC03G24730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-58DNA binding