PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001658G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 175aa    MW: 18853.6 Da    PI: 6.9853
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001658G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.2e-40161151100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+lapyfp +++ +f+ +h++FGasn++kll++lpe  r da+ss+vyeAearardPvyG++g + +lq+q+++lk++l
  PH01001658G0140  16 PCAACKTLRRRCADGCTLAPYFPPTEAGRFWTAHRVFGASNMMKLLQELPEGCRADAVSSMVYEAEARARDPVYGCAGAVCRLQKQVNELKVQL 109
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++ 
  PH01001658G0140 110 ARAQAD 115
                      *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.49115116IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3916113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MESASGTSPM LAVLSPCAAC KTLRRRCADG CTLAPYFPPT EAGRFWTAHR VFGASNMMKL  60
LQELPEGCRA DAVSSMVYEA EARARDPVYG CAGAVCRLQK QVNELKVQLA RAQADLLNLH  120
AHYADLLQLL QTPPPPAAAH DHDHDHDVLL LQALHGGHAS GPAAALVQAQ QQLWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-391511710112LOB family transfactor Ramosa2.1
5ly0_B5e-391511710112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001658G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935440.0FP093544.1 Phyllostachys edulis cDNA clone: bphyst018p14, full insert sequence.
GenBankFP1012370.0FP101237.1 Phyllostachys edulis cDNA clone: bphylf044o11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649894.16e-66PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR05e-55LBD1_ARATH; LOB domain-containing protein 1
TrEMBLJ3LMQ11e-64J3LMQ1_ORYBR; Uncharacterized protein
STRINGOB03G23270.12e-65(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-55LOB domain-containing protein 1