PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001669G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 267aa    MW: 29192.2 Da    PI: 6.9384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001669G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-24161438126
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevls 94 
                      hP+d+el+  yL++++++   ++ e+i+++d+y ++P dL +      ++ +ek wyfF++ ++k+++g+rk r++   +g W++    k+v++
  PH01001669G0130  16 HPSDQELILSYLRPRIASGGDRTCEFIHNADVYAADPADLTEefcpaIASDGEKAWYFFTTLRSKSRRGQRKARTVGsgEGCWHTEHGAKAVVA 109
                      9*****************99999899**************84477754455788********************86644788**9999999999 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmhey 126
                         +++++g ++++ f ++++ +  ++ W+m e 
  PH01001669G0130 110 GvlRSRQIGRRQSFSFVTKEDGRRIRSGWIMVEI 143
                      889999***********9999999*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.6329165IPR003441NAC domain
PfamPF023651.6E-1316142IPR003441NAC domain
SuperFamilySSF1019411.44E-3316165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVPSGSDAPS ADLGSHPSDQ ELILSYLRPR IASGGDRTCE FIHNADVYAA DPADLTEEFC  60
PAIASDGEKA WYFFTTLRSK SRRGQRKART VGSGEGCWHT EHGAKAVVAG VLRSRQIGRR  120
QSFSFVTKED GRRIRSGWIM VEIGLNHGKD EGSQDEIVLC KVYRSPRAAP ARGVKKPTAA  180
AAAGRKRNAD DRNSGAARHV RLCSRCRTQP AESQSETADD AVEEDEPRGR SETLLEGESD  240
APHGDETGDS LEDRRDLRAT TFYHFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001669G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0967270.0FP096727.1 Phyllostachys edulis cDNA clone: bphyem112a01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566991.25e-83uncharacterized protein LOC100830721
TrEMBLA0A2K2DE776e-82A0A2K2DE77_BRADI; Uncharacterized protein
STRINGBRADI2G46430.12e-82(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.15e-20NAC domain containing protein 35