PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001671G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 300aa    MW: 32283.9 Da    PI: 6.7175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001671G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.11.1e-20243284242
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k++  s 
  PH01001671G0400 243 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQLYLSM 284
                      7************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-21227281IPR003657WRKY domain
SuperFamilySSF1182904.71E-18235284IPR003657WRKY domain
PROSITE profilePS5081119.531237280IPR003657WRKY domain
SMARTSM007746.6E-15242295IPR003657WRKY domain
PfamPF031062.6E-17244283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEPGHLSLRT GGAAFTRRHD EEGGRRGEIK EVDFFLASGD AAARRQDGGG RGVVHGGRDD  60
VNMEAAAAVE AELRRVVEEN LRLRGMLEEL TRSYGTMYHQ LLQVTQQQHQ PHRHPDLMMN  120
NRSPLATQTH LTAGAPDPST TTLQFLEPRA SSTAQQADAD GTSDTGVDDE AGAGTGDASP  180
SLSNAGNDAD GRIAVPFGGG KRRMAQDEAA PGREGGEQAS SEQLPCRKPR VSVRARSEAP  240
MISDGCQWRK YGQKMAKGNP CPRAYYRCTM AIGCPVRKQL YLSMASEVSV SIYLFIEGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001671G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233067.11e-103probable WRKY transcription factor 47
TrEMBLA0A1D8F0J21e-145A0A1D8F0J2_9POAL; WRKY9 protein
STRINGBRADI2G11170.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.15e-33WRKY family protein