PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001672G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 376aa    MW: 41111.2 Da    PI: 6.6573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001672G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-11320368146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      r++W++  ++ l+++v+++G+g+Wk I    +   + R+  ++k+++++
  PH01001672G0380 320 RKKWSEMQEKTLIEGVEKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRN 368
                      789********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.046315374IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-11316371IPR009057Homeodomain-like
SuperFamilySSF466892.77E-13317370IPR009057Homeodomain-like
SMARTSM007174.4E-8319372IPR001005SANT/Myb domain
PfamPF002491.6E-9320369IPR001005SANT/Myb domain
CDDcd116601.38E-20321371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPPLAADDAF LILEFVAGNR LVPHPVFTSL LASLPSVSPR TSPRLRKGLA LRALDAALSD  60
ADAHLHKARA VLADPGLASC FPQHPSLSVP DLKRFVDVEW GSLPQSTLEI AADRIAGAGA  120
LDTWANADHA KREKLRLLVG ESTEREILGK LGQYTSAPLP PMAPEINKAA ANAPNTSGAN  180
EAYSAQEDDE ADLVKKNGNV GHAQEDSARH QEDPVKGAPV AQLPENLVTS ATVKGKDHDI  240
PEMINNATAS HVTGQFAPDN NKNHPVPSSK RSLMERNPTA STYEWDGLDD SDPERPSPKR  300
QLPTFEKKQK PSPTFPHKTR KKWSEMQEKT LIEGVEKYGK GNWKDIKMAY PDVFEDRSTV  360
DLKDKFRNME RHQCV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001672G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.11e-152uncharacterized protein LOC4344404
TrEMBLA0A446LVA71e-164A0A446LVA7_TRITD; Uncharacterized protein
STRINGMLOC_20213.21e-160(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.19e-11TRF-like 5