PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001678G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 324aa    MW: 32736.5 Da    PI: 9.5836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001678G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383.1e-12126171555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  PH01001678G0300 126 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYLKFLQ 171
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-13119175No hitNo description
PROSITE profilePS5088817.333121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9126171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLRLSDLHRQ GLAAPGGEEN RGGVFSPLPL LTDRTSAPAR EEMEGGFKSS NATGGDHALF  60
NGFGVHAPTA VQPPFVQGGS MSGQSFGAPA ASGGTAPASS GGGGGASAPP RQQRMRARRG  120
QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDYLKFL QLQVKVLSMS  180
RLGGAAGMAP LVASMSSEGN SNGKSNNSGG NGTAAKGTGN GSSDSAGGSL RVTEQQVAKM  240
MEEDMGTAMQ YLQGKGLCLM PISLASAISS ATSSVSLLSQ PAVHHAGGQL HDGTVPTSPA  300
VANGAAGGDD SRSVKDGVAG GKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001678G0300
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697791e-60EU969779.1 Zea mays clone 335593 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693472.11e-133PREDICTED: transcription factor bHLH69-like
SwissprotQ9ZUG91e-74BH066_ARATH; Transcription factor bHLH66
TrEMBLJ3MBV51e-131J3MBV5_ORYBR; Uncharacterized protein
STRINGOB06G14990.11e-132(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-42LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]