PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001690G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 702aa    MW: 76994.6 Da    PI: 6.9612
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001690G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.5e-25148249199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  PH01001690G0310 148 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELMAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNNKKLVSGDAVLFL--RGE 238
                      99****************************9966654.569************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  PH01001690G0310 239 DGELRLGVRRA 249
                      999*****996 PP
2Auxin_resp107.61.4e-35274354182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha++ ks+F+++YnPr s+seF+++ +k+++++++++svGmRfkm++ +ed+serr++G+++g +++dp  W++SkW++L
  PH01001690G0310 274 VAHAVAVKSIFHIYYNPRLSQSEFIIPHWKFMRSFRQPFSVGMRFKMRYGSEDASERRCTGIIIGSREADP-MWHGSKWKCL 354
                      799********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-42145259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-39145253IPR015300DNA-binding pseudobarrel domain
CDDcd100174.37E-22146248No hitNo description
PfamPF023622.1E-22148249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437148250IPR003340B3 DNA binding domain
SMARTSM010198.8E-23148250IPR003340B3 DNA binding domain
PfamPF065072.0E-29274354IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MTGIDLNTVE EDEEEGAEEG GPVAAEPARR GAVCLELWHA CAGPVAPLPR KGSAVVYLPQ  60
GHLEHIGDEG GAGAAAAVPP HVFCRVVDVN LHADAATDEV YAQVSLVPDS EEAERLMRDR  120
EGEAACDGDG DGEDGDAAKR LARIPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS  180
LQRPSQELMA KDLHGTEWRF RHIYRGQPRR HLLTTGWSAF VNNKKLVSGD AVLFLRGEDG  240
ELRLGVRRAA QLKNVSPFPT LHNQGSSHSN LGNVAHAVAV KSIFHIYYNP RLSQSEFIIP  300
HWKFMRSFRQ PFSVGMRFKM RYGSEDASER RCTGIIIGSR EADPMWHGSK WKCLVVRWDD  360
DLECRRANRV SPWEVELTGS VSGSHLSTPH PKRLKPCLPQ VNPDILLPTG SVSSDFAEST  420
RFHKVLQGQE LLGFKTHDGT VNAASQVSEA RNFQYTDERS CTINMSNILG VPRLRARTPP  480
GNHGFSYHCS GFGESQRFQK VLQGQEVFRP YRGGTLPDAC IRGSGFCQPD GNHASGAGYK  540
WLAPQGSCDY RGPTTPVLLP QASSPSSVLM FPQTSSKIPG FEYVYGYLDK DENGSHVRVT  600
PTQDMGRTDQ TLPLWPHLVS GKVIDECTGT EKLHSPISGA EHEPNNKHVN TNGCKIFGIS  660
LTEKSLNPQM PKSLGNSCAT VHEQRPVVGR VVDVPVVDMM I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1093238418361Auxin response factor 1
4ldy_B1e-1093238418361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001690G0310
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712910.0AB071291.1 Oryza sativa OsETTIN2 mRNA for Arabidopsis ETTIN-like protein 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647511.10.0auxin response factor 2 isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLI1NQJ00.0I1NQJ0_ORYGL; Auxin response factor
STRINGORGLA01G0213000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-166ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]