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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PH01001692G0030 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family | GRAS | ||||||||
| Protein Properties | Length: 718aa MW: 75989.5 Da PI: 6.0055 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 277.8 | 3.2e-85 | 359 | 716 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
+ L ++A+a + g+ a+++Larl+++ + g+p+ R a+y++eAL la+ + +++ +s+ +++ +laa+k fs++sP+l+f+++
PH01001692G0030 359 DELAAAAKAAEVGNSIGAREILARLNQQLPSIGKPFLRSASYLKEALLLALAD-----GHHGSTRLASPLDVALKLAAYKSFSDLSPVLQFANF 447
7899*************************************************.....55667777777789********************** PP
GRAS 97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
ta qa+ ++++ +++HiiDfd++ G+QW+++lq+L+ R+ + p+l++T+++s++s++ el+ t+++L++fA+ lg+pfefn++
PH01001692G0030 448 TATQALFDEIACTtaSCIHIIDFDLGVGGQWASFLQELSHRRgtgsVSLPMLKLTAFVSAASHHPLELHLTRDNLSQFASDLGIPFEFNAI--- 538
********87655559*************************97655569*****************************************9... PP
GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
+++ +++ e+ + +E++aV+l + +l+ +L+lvk+l Pk+vv +++ +d+++ +F ++fl++++ + +l+dsl+a ++
PH01001692G0030 539 NFNVFDPMEFVAPTaDEVVAVSLPVGCSART---PPLP----VLLQLVKQLAPKIVVAIDHGSDRGDLPFSQHFLNCFQSCIVLLDSLDAV-GT 624
999999999966668*********9766554...5555....5*********************************************998.89 PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
++e+++k+Er+l++++++++v + ++ +++ Wr + +aGF pvpls+ a++qa++ll++v+++g++ve++ lvl+W++ +LvsvS
PH01001692G0030 625 DAEAASKIERFLIQPRVEDAVLGRRRA-----DKAMAWRTVFASAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVGLVLYWQRGELVSVS 713
99*******************977665.....8899********************************************************** PP
GRAS 372 aWr 374
aWr
PH01001692G0030 714 AWR 716
**8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 43.301 | 331 | 696 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.1E-82 | 359 | 716 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0007623 | Biological Process | circadian rhythm | ||||
| GO:0048768 | Biological Process | root hair cell tip growth | ||||
| GO:0051301 | Biological Process | cell division | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 718 aa Download sequence Send to blast |
MRAAPFRAEG NVAVELAGSI EALLWPEDKG GGRLLVEPTS VLDCRWSPSP PMSTSTLSSS 60 LGGGAAADST SVATVSDNSA AAAKATKWAV PGEHGGGGGR KEEWGGGELP PMPGALDVGF 120 VGEESWDAML GDAAAAAGQE QTFLNWIMAG PGDMETPAPA LQQQQLLGNA AGFGLQAADP 180 LGFSLQRHPG GAASPAALAS NLASSGARSL TSNNGSNSRA TSTFGHLSLE AALQPPPATI 240 MPFHDGADIK PPLLGVPSPS LLLNQYQPTP VSTFFMPLPS FPDHQQQPLL QPPQKRHHSM 300 PDNLFLLQNE LQPPPRPTQC LPFPPLHNTT PFHLQPSPQP PQSAMKTTAA AQQQQQLLDE 360 LAAAAKAAEV GNSIGAREIL ARLNQQLPSI GKPFLRSASY LKEALLLALA DGHHGSTRLA 420 SPLDVALKLA AYKSFSDLSP VLQFANFTAT QALFDEIACT TASCIHIIDF DLGVGGQWAS 480 FLQELSHRRG TGSVSLPMLK LTAFVSAASH HPLELHLTRD NLSQFASDLG IPFEFNAINF 540 NVFDPMEFVA PTADEVVAVS LPVGCSARTP PLPVLLQLVK QLAPKIVVAI DHGSDRGDLP 600 FSQHFLNCFQ SCIVLLDSLD AVGTDAEAAS KIERFLIQPR VEDAVLGRRR ADKAMAWRTV 660 FASAGFAPVP LSNLAEAQAD CLLKRVQVRG FHVEKRGVGL VLYWQRGELV SVSAWRC* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 1e-25 | 357 | 716 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | PH01001692G0030 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015637143.1 | 0.0 | scarecrow-like protein 27 | ||||
| TrEMBL | A0A0E0DGW8 | 0.0 | A0A0E0DGW8_9ORYZ; Uncharacterized protein | ||||
| STRING | ORGLA04G0182200.1 | 0.0 | (Oryza glaberrima) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2020 | 37 | 96 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00150.1 | 4e-83 | GRAS family protein | ||||




