PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001692G0030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 718aa    MW: 75989.5 Da    PI: 6.0055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001692G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.83.2e-853597163374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a + g+   a+++Larl+++  + g+p+ R a+y++eAL   la+      +  +++ +s+ +++ +laa+k fs++sP+l+f+++
  PH01001692G0030 359 DELAAAAKAAEVGNSIGAREILARLNQQLPSIGKPFLRSASYLKEALLLALAD-----GHHGSTRLASPLDVALKLAAYKSFSDLSPVLQFANF 447
                      7899*************************************************.....55667777777789********************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+ ++++    +++HiiDfd++ G+QW+++lq+L+ R+     + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++   
  PH01001692G0030 448 TATQALFDEIACTtaSCIHIIDFDLGVGGQWASFLQELSHRRgtgsVSLPMLKLTAFVSAASHHPLELHLTRDNLSQFASDLGIPFEFNAI--- 538
                      ********87655559*************************97655569*****************************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +++ +++ e+   + +E++aV+l +          +l+     +L+lvk+l Pk+vv +++ +d+++ +F ++fl++++ + +l+dsl+a  ++
  PH01001692G0030 539 NFNVFDPMEFVAPTaDEVVAVSLPVGCSART---PPLP----VLLQLVKQLAPKIVVAIDHGSDRGDLPFSQHFLNCFQSCIVLLDSLDAV-GT 624
                      999999999966668*********9766554...5555....5*********************************************998.89 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      ++e+++k+Er+l++++++++v  + ++      +++ Wr  + +aGF pvpls+ a++qa++ll++v+++g++ve++   lvl+W++ +LvsvS
  PH01001692G0030 625 DAEAASKIERFLIQPRVEDAVLGRRRA-----DKAMAWRTVFASAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVGLVLYWQRGELVSVS 713
                      99*******************977665.....8899********************************************************** PP

             GRAS 372 aWr 374
                      aWr
  PH01001692G0030 714 AWR 716
                      **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.301331696IPR005202Transcription factor GRAS
PfamPF035141.1E-82359716IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MRAAPFRAEG NVAVELAGSI EALLWPEDKG GGRLLVEPTS VLDCRWSPSP PMSTSTLSSS  60
LGGGAAADST SVATVSDNSA AAAKATKWAV PGEHGGGGGR KEEWGGGELP PMPGALDVGF  120
VGEESWDAML GDAAAAAGQE QTFLNWIMAG PGDMETPAPA LQQQQLLGNA AGFGLQAADP  180
LGFSLQRHPG GAASPAALAS NLASSGARSL TSNNGSNSRA TSTFGHLSLE AALQPPPATI  240
MPFHDGADIK PPLLGVPSPS LLLNQYQPTP VSTFFMPLPS FPDHQQQPLL QPPQKRHHSM  300
PDNLFLLQNE LQPPPRPTQC LPFPPLHNTT PFHLQPSPQP PQSAMKTTAA AQQQQQLLDE  360
LAAAAKAAEV GNSIGAREIL ARLNQQLPSI GKPFLRSASY LKEALLLALA DGHHGSTRLA  420
SPLDVALKLA AYKSFSDLSP VLQFANFTAT QALFDEIACT TASCIHIIDF DLGVGGQWAS  480
FLQELSHRRG TGSVSLPMLK LTAFVSAASH HPLELHLTRD NLSQFASDLG IPFEFNAINF  540
NVFDPMEFVA PTADEVVAVS LPVGCSARTP PLPVLLQLVK QLAPKIVVAI DHGSDRGDLP  600
FSQHFLNCFQ SCIVLLDSLD AVGTDAEAAS KIERFLIQPR VEDAVLGRRR ADKAMAWRTV  660
FASAGFAPVP LSNLAEAQAD CLLKRVQVRG FHVEKRGVGL VLYWQRGELV SVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-253577164375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001692G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA0A0E0DGW80.0A0A0E0DGW8_9ORYZ; Uncharacterized protein
STRINGORGLA04G0182200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-83GRAS family protein