PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001697G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 356aa    MW: 38671.9 Da    PI: 10.3405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001697G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31289346359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  PH01001697G0180 289 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 346
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-9227285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-34275346IPR003657WRKY domain
PROSITE profilePS5081130.297282348IPR003657WRKY domain
SuperFamilySSF1182902.88E-27285346IPR003657WRKY domain
SMARTSM007742.6E-38287347IPR003657WRKY domain
PfamPF031062.6E-27289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEVEEANRG AVESCHRVLA LLSQPQDPAQ LRSIALETDE ACARFRKVVS LLSNGGGGGV  60
AAAGGSHPRA KVVSRRQTPG FLSQKGFLDS NTPVVVLNSA HASPSSAQVY PRMGILDSPS  120
GHQIGGPPKM VQPLSAHFQF GNVSCYQFQH QQQQQKMQAE MFKRSNSGIN LKFDTPSGTG  180
TMSSARSFLS SLSMEGSVAS LDGKSSSFHL IGGPAMSDPV NAQQAPRRRC TGRGEDGNGK  240
CAATGRCHCS KRRLNIIRCF MRYFSRKLRV KRSIKVPAIS NKIADIPPDE YSWRKYGQKP  300
IKGSPHPRGY YKCSSVRGCP ARKHVERCVD DPSMLIVTYE GEHNHTRMPT QSAQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20280349775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001697G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4621251e-163KJ462125.1 Bambusa emeiensis transcription factor WRKY2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232453.10.0protein WRKY1 isoform X1
RefseqXP_025795417.10.0protein WRKY1-like isoform X1
SwissprotQ93WU65e-90WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2S3IK150.0A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3I70.0A0A2T7C3I7_9POAL; Uncharacterized protein
TrEMBLI1GQ690.0I1GQ69_BRADI; Uncharacterized protein
STRINGBRADI1G14300.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.15e-80WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]