PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001704G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 176aa    MW: 19727 Da    PI: 8.6448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001704G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182068355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r+++ +grW++eIrdp     +  r++lg+f+ta +Aa+a++a +++++g
  PH01001704G0270 20 YRGIRQRP-WGRWASEIRDPI----KgVRVWLGTFDTAADAARAYDAEARRIHG 68
                     9*******.**********72....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6421976IPR001471AP2/ERF domain
SMARTSM003809.6E-361982IPR001471AP2/ERF domain
PfamPF008471.8E-102068IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-212077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-312077IPR001471AP2/ERF domain
PRINTSPR003673.9E-112031IPR001471AP2/ERF domain
CDDcd000183.37E-162277No hitNo description
PRINTSPR003673.9E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAFSKWDRPR RRRARRSYPY RGIRQRPWGR WASEIRDPIK GVRVWLGTFD TAADAARAYD  60
AEARRIHGSK AKTNFPHKAA SPSQASYHRK HHGPLSSCSS IITDGTADPL CFLFDDAARE  120
ASPTESAATP TSTEVSSEPA DARILLECCS DDLMDSLLAG FDVTTNMDIW SFDFRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202081668ATERF1
3gcc_A1e-202081668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714RPRRRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001704G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016320.0FP101632.1 Phyllostachys edulis cDNA clone: bphylf047d18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.14e-42ethylene-responsive transcription factor 1-like
TrEMBLA0A0D9XC322e-46A0A0D9XC32_9ORYZ; Uncharacterized protein
STRINGLPERR09G02820.13e-47(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-17ERF family protein