PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001725G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 340aa    MW: 36086.8 Da    PI: 5.8626
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001725G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93e-06446541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +e  e++  C  ++  lC+ C    H        H++ p
  PH01001725G0310  4 LCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHQRLP 46
                     7******99*********************6577888888776 PP
2zf-B_box25.62.5e-085998437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +kC+ ++e  + +fC +++ llC++C ++ H        H
  PH01001725G0310 59 PKCDICQECYAYFFCLEDRALLCRSCDVAVHTAnafvsaH 98
                     7999999855*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.85147IPR000315B-box-type zinc finger
SMARTSM003361.1E-9147IPR000315B-box-type zinc finger
CDDcd000217.69E-7347No hitNo description
SMARTSM003366.5E-1256103IPR000315B-box-type zinc finger
PfamPF006436.3E-75990IPR000315B-box-type zinc finger
CDDcd000212.06E-859103No hitNo description
PROSITE profilePS501199.04461103IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHAANRLAG KHQRLPLLTP AATPVSLPPK  60
CDICQECYAY FFCLEDRALL CRSCDVAVHT ANAFVSAHRR FLLTGVQVGQ EEDDHSPDPP  120
EPSPPPPAKS DPAPPYGEGD FSWAAATPDA TGVTGGLPDW SIVNEQFGSP APRHTEADSG  180
KLGGSTDGSP YYRSSSEDRN AVELFGQEYI QPGPFISRPL CATIIIGPIG ILDTPWTMVQ  240
IGIGPAPICR LRKGLELSWA ESPRIRLVSP FASTDANTLC RLYTTASPSK PPLECLLFSP  300
LPAHLASMAP TRVTVGDGHR EKGGGRSRPR GGGRDADGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001725G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960801e-103FP096080.1 Phyllostachys edulis cDNA clone: bphyst018e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808322.12e-81B-box zinc finger protein 22-like
TrEMBLA0A2T7E6W12e-80A0A2T7E6W1_9POAL; Uncharacterized protein
STRINGPavir.Cb01671.1.p3e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-48light-regulated zinc finger protein 1