PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001737G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 569aa    MW: 60581 Da    PI: 7.0344
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001737G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33222278259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g Hnh 
  PH01001737G0080 222 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGAHNHA 278
                      8****************************************.***************7 PP
2WRKY105.92.2e-33385443159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  PH01001737G0080 385 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 443
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-29212280IPR003657WRKY domain
SuperFamilySSF1182902.48E-25215280IPR003657WRKY domain
PROSITE profilePS5081123.479216280IPR003657WRKY domain
SMARTSM007741.4E-36221279IPR003657WRKY domain
PfamPF031063.4E-25222277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37370445IPR003657WRKY domain
SuperFamilySSF1182901.96E-29377445IPR003657WRKY domain
PROSITE profilePS5081138.687380445IPR003657WRKY domain
SMARTSM007741.2E-38385444IPR003657WRKY domain
PfamPF031069.6E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MTTSSSGSIE TSANSRPGSF SFASTSFTDL LGGSEAGGGA AGGVSSYKAM TPPSLPLSPP  60
LVSPSSYFNM PTGLNPADFL YSPVLLTSSI FPSPTTVAFG SQQFNWRPEA AAPSAEQGGK  120
DEQRQPSYSD FSFQTAPVNN EEAARTTTFQ PPIPPAPLGE EAYRGQQQQQ PWGYQQAAGM  180
DAGANPAGFG AAPFQATSSE MAPHVAASGG YSQTHSQRRS SDDGYNWRKY GQKQVKGSEN  240
PRSYYKCTFP NCPTKKKVER SLDGQITEIV YKGAHNHAKP QNTRRASGAG SAAAQVLQSG  300
GDASEHSFGG ISGTPENSSA SFGDDEIGVC SPRAGNVGGD KYDDDEPDSK RWRKEGDGEG  360
ISMAGNRTVR EPRVVVQTMS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTTAGCPVRK  420
HVERASHDLR AVITTYEGKH NHDVPAARGS AALYRPAPPA DNAGSSSLHY LPNQQAMTYQ  480
TGSASHDGAA GTQHALRPDG FGSQGSSFGP SGGPMQAAGS SFGFSGFDNP MGSYMSQQQQ  540
QQRQNDAMHA SRTKEEPRED MFFQHSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36213446878Probable WRKY transcription factor 4
2lex_A5e-36213446878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001737G0080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071990.0AK107199.1 Oryza sativa Japonica Group cDNA clone:002-125-B01, full insert sequence.
GenBankAY6769250.0AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.
GenBankAY8706080.0AY870608.1 Oryza sativa (japonica cultivar-group) WRKY24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644934.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLJ3L5E50.0J3L5E5_ORYBR; Uncharacterized protein
STRINGOB01G44510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-100WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]