PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001738G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family YABBY
Protein Properties Length: 256aa    MW: 27072.9 Da    PI: 7.2614
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001738G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY221.52.4e-68192105170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee................lleelkve 78 
                      s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+       +  a + h+++sl  +                l       
  PH01001738G0010  19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlppaEPPANQLHFGHSLLSPtsphglldevafqtpsL------- 105
                      578********************************************9985532222233355566655578889666666544432....... PP

            YABBY  79 eenlksnvekeesastsvssekl................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsa 155
                           + + + + +s + +s++                 + +++ e+p+  p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsa
  PH01001738G0010 106 ----LMDQASANLSSITGRSNNScasnvpampmpmpgakPAQQEPELPKSAPsANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSA 195
                      ....33332222222222221111222233344789988788888999987779**************************************** PP

            YABBY 156 aaknWahfPkihfgl 170
                      aaknWahfP+ihfgl
  PH01001738G0010 196 AAKNWAHFPHIHFGL 210
                      *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.9E-7020210IPR006780YABBY protein
SuperFamilySSF470957.72E-8149203IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.2E-4159202IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSSSSSSSAA FPLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL  60
SVNLRGLLLP PAEPPANQLH FGHSLLSPTS PHGLLDEVAF QTPSLLMDQA SANLSSITGR  120
SNNSCASNVP AMPMPMPGAK PAQQEPELPK SAPSANRPPE KRQRVPSAYN RFIKDEIQRI  180
KAGNPDITHR EAFSAAAKNW AHFPHIHFGL TPDQGLKKTF MPQDGAEDML LKDGLYAAAA  240
AAAAAEAANM GLTPF*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001738G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155221.11e-150protein YABBY 4-like isoform X2
SwissprotA2X7Q31e-132YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-132YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A3B6QIK71e-149A0A3B6QIK7_WHEAT; Uncharacterized protein
TrEMBLA0A453P6421e-149A0A453P642_AEGTS; Uncharacterized protein
STRINGTraes_6DL_59DB06B9F.11e-145(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]