PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001738G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 203aa    MW: 21448.4 Da    PI: 4.4907
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001738G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-133341548
                     HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++ lG++ W++Iar+++ gRt++++k++w++yl
  PH01001738G0330  3 LHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 34
                     7899****.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.846138IPR017930Myb domain
SMARTSM007170.0065236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-17235IPR009057Homeodomain-like
SuperFamilySSF466891.87E-10239IPR009057Homeodomain-like
PfamPF002497.4E-11334IPR001005SANT/Myb domain
CDDcd001677.34E-9334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSLHAALGNK WSRIARHLPG RTDNEVKNYW NSYLKKRVES SKQGPNTPAP ATNSAADSDD  60
SQSLKPGETT QEPASQPSNS DSSEPPHESS SADSSCLTMT EPPVRPHAPV TPKVMFADWL  120
NMDYISGQIA AAPGLNAAGV VGAGASPGDH HQVMSQGSVQ VDGPSSVDDS LHGFGDNGTC  180
WEFQEQFDSI DLLSISELFG LN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001738G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0968491e-142FP096849.1 Phyllostachys edulis cDNA clone: bphyem207b10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953256.17e-85transcription factor MYB4
TrEMBLA0A0A9F8A81e-94A0A0A9F8A8_ARUDO; Uncharacterized protein
STRINGSi017947m3e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-16myb domain protein 19