PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001759G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 586aa    MW: 61337.1 Da    PI: 6.6213
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001759G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-083133501954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk+ gLt +qV++WF N R +
  PH01001759G0460 313 FEHflHPYPKDSDKIMLAKQSGLTRSQVSNWFINARVR 350
                      664459******************************88 PP
2BELL116.11.7e-37175246172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+kk kL++ll+eV+++Y+qy++q+q+v+ssFeavag gsa+ Yt+lAl++iSr+FrcL+dai  q+
  PH01001759G0460 175 ERQELQMKKGKLIKLLDEVEQWYRQYHQQMQVVVSSFEAVAGGGSARTYTALALRTISRQFRCLRDAIEAQV 246
                      79******************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.9E-5399244IPR006563POX domain
PfamPF075264.3E-48104242IPR006563POX domain
PROSITE profilePS5007111.92291354IPR001356Homeobox domain
CDDcd000862.35E-12294355No hitNo description
SMARTSM003891.4E-8294358IPR001356Homeobox domain
SuperFamilySSF466891.63E-16295361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-28297360IPR009057Homeodomain-like
PfamPF059202.5E-17311350IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MMLLNSAVSS MNPASFGHQA SPSSAQHFIG IPLQAPPSGY NLWTPSTTGA GDMSPPQQAP  60
GAAGVSAVLS LSSRETQPVT VAAVAGNEGK YLGASATTTS QGQMVMSSKY LRAAQELLDD  120
VVSVSKGVED AKAAAAAKST ASVKKKEDSE GVSGGGTEDG GGAKSFGAAE MSTAERQELQ  180
MKKGKLIKLL DEVEQWYRQY HQQMQVVVSS FEAVAGGGSA RTYTALALRT ISRQFRCLRD  240
AIEAQVRAAS RALGEDADAG VGGRTVGSRL RYIDHQLRQQ RALQQLGMMQ SSAWRPQRGL  300
PERSVSILRA WLFEHFLHPY PKDSDKIMLA KQSGLTRSQV SNWFINARVR LWKPMVEEMY  360
LEETKDQSAG GDEGKSGGSK SNNTTDVNGV DPHKPDCNAT SKAVARVGGA ESGSKDAVVH  420
ASLLELAGDH QTQAGFYDDD DDDDGSGAAA LQHKLKKARA DEQPAFHVSD VATLHAQAAA  480
ATRRDEVSHR ELLMKFMESG GGTAVGARDH QDGGGGYSLF APAPYGQFGS EPFAFAGHGG  540
VSLTLGLPNG AGAPEHTASF LLSSSNGSDS GGGQAATASP PPATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A6e-17300358159Homeobox protein Meis2
5bng_B6e-17300358159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001759G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-99BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1E5WEK50.0A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRINGSi026085m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.15e-89BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]