PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001773G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 252aa    MW: 26868 Da    PI: 5.81
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001773G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-2080130256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa  ++ a+++l+g+
  PH01001773G0070  80 RFRGVRRRP-WGKWAAEIRDP-----KlgRRLWLGTFDTAEEAASVYDSAALRLRGP 130
                      69*******.**********9.....445**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.1E-423246IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103224.06580137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2980137IPR001471AP2/ERF domain
PfamPF008471.5E-1280129IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2180137IPR016177DNA-binding domain
SMARTSM003802.0E-3680145IPR001471AP2/ERF domain
PRINTSPR003672.2E-108192IPR001471AP2/ERF domain
CDDcd000185.42E-2588136No hitNo description
PRINTSPR003672.2E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDAQRLPRHH AVRVVRIHLL DADATDSSDD ERRRRRRVRR CVQQIDLLPP SPPAAAVSSG  60
ARVVRTEKKG ACGCVDGRRR FRGVRRRPWG KWAAEIRDPK LGRRLWLGTF DTAEEAASVY  120
DSAALRLRGP GAVTNFSSPS SSPSSDVSVP SPESSTASPP LALTNSPASS TVSPSVPSPE  180
NSTASPSPTS SVFDAEEVIA AAFGMGFEEE ETLDLTEFCL PATGSLWWGT PAAAAAEFGE  240
LGDLDDLFAP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20801361471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138RRRRRRVR
23139RRRRRRVRR
33239RRRRRVRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001773G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172264.12e-59pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9SUE37e-35CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A3B6JGV53e-58A0A3B6JGV5_WHEAT; Uncharacterized protein
STRINGPavir.J11205.1.p3e-43(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.16e-22cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]