PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001777G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WRKY

Protein Properties

Length: 273aa MW: 28886.6 Da PI: 9.8502

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001777G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	3.9e-30	127	186	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsaed++++ tYegeHnh PH01001777G0070 127 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDNTILAATYEGEHNHG 186 58*************************99**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	25.706	122	188	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.7E-29	126	188	IPR003657	WRKY domain
SuperFamily	SSF118290	1.05E-25	126	188	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	127	187	IPR003657	WRKY domain
Pfam	PF03106	5.1E-25	128	185	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MLRAVVAKYA ELQGKVNEMM AAAAANNGTA ANHQSSTSEG GSVSPSRKRI RSDSLDTAGA 60 GGHHHHKPSP PFAAASSFVV VPDQMECTSA AAATAGHEPC KRIREECKPK VSKLYVRADP 120 SDLSLVVKDG YQWRKYGQKV TKDNPCPRAY FRCSFAPACP VKKKVQRSAE DNTILAATYE 180 GEHNHGQPPQ HDGKNAAGAA AAVKPPPSDA VVRALPLGQQ QQQQKEAGSS EVAVRKNLAE 240 QMAVTLTRDP GFKAALVSAL SGRILELSPS KN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	126	189	13	75	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250\|UniProtKB:Q6QHD1, ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:21961049, ECO:0000269\|PubMed:23462973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001777G0070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:23462973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092380	1e-120	FP092380.1 Phyllostachys edulis cDNA clone: bphylf003o20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810564.1	1e-125	WRKY transcription factor WRKY28-like isoform X2
Swissprot	Q0DAJ3	1e-122	WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBL	A0A0E0E4F3	1e-126	A0A0E0E4F3_9ORYZ; Uncharacterized protein
STRING	OMERI06G21220.1	1e-127	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1822	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	6e-50	WRKY DNA-binding protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Berri S, et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] Delteil A, et al. Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] Peng Y,Bartley LE,Canlas P,Ronald PC OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] Chujo T, et al. OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]