PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001786G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 493aa    MW: 51619.3 Da    PI: 8.6744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001786G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-052244123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  PH01001786G0250 22 FVCEICNKGFQRDQNLQLHRRGH 44
                     89*******************88 PP
2zf-C2H213.30.0002498120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  PH01001786G0250  98 WKCDKCSKKYAVQSDWKAHTKTC 120
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-72144No hitNo description
PfamPF121717.8E-52244IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9492244IPR007087Zinc finger, C2H2
SMARTSM003550.0172244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003552206393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-485119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-793118No hitNo description
SMARTSM0035514098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKEARK  60
RVYVCPEPSC VHHDPSRALG DLTGVKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHTKTC  120
GSREYRCDCG TLFSRRDSFI THRAFCDALA EESAKARPAP PPAEEDGSSV AAGPPPQVSI  180
PAVPAPLKQL PPPPAAPAPA QQQEEQERET NAAPEHVQFT PPAPSQPPVT AANVSTSTSS  240
VAATSQSLLG SIFAPSSVAQ APQYPDLIGG QRGRGERALP AKPPSLCLAT DASSSLFSAP  300
VAVDRQQFAP PPPPSPSPHM SATALLQKAA QMGATSSSSS FLRGLGLDMS SSSPAASSSG  360
QHQHQEATQV SLPEGSLPQW PPRLEPEPAP MLSAGLGLGL PYDSTGGPVG LPELMMGQSS  420
LFSAKPATLD FLGLGMSPTG ASASRGLSAF IQPIGGAVGM AGTSTGAAET FGAGRGAQAK  480
PWERNPGSSP IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3594155364Zinc finger protein JACKDAW
5b3h_F3e-3594155364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001786G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152675.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-135IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A3B6HPZ90.0A0A3B6HPZ9_WHEAT; Uncharacterized protein
TrEMBLA0A446QM670.0A0A446QM67_TRITD; Uncharacterized protein
STRINGTraes_4AS_501676A91.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]