PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001794G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 266aa    MW: 28457 Da    PI: 7.3233
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001794G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06446541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +e  e++  C  ++  lC+ C    H        H++ p
  PH01001794G0130  4 LCSACEAAEARVICCADEAALCARCDRDVHAAnrfagkHQRLP 46
                     7******99*********************6577888888876 PP
2zf-B_box27.37.3e-095899237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++kC+ ++e ++ +fC +++ llC++C ++ H        H
  PH01001794G0130 58 SPPKCDICQECHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 99
                     6799******88*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.68147IPR000315B-box-type zinc finger
SMARTSM003369.0E-10147IPR000315B-box-type zinc finger
CDDcd000214.56E-6347No hitNo description
PROSITE profilePS501199.357104IPR000315B-box-type zinc finger
SMARTSM003363.6E-1357104IPR000315B-box-type zinc finger
PfamPF006431.2E-75998IPR000315B-box-type zinc finger
CDDcd000218.80E-960104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKVLCSACEA AEARVICCAD EAALCARCDR DVHAANRFAG KHQRLPLLAP GAAAPVSSPP  60
KCDICQECHA YFFCLEDRAL LCRSCDVAVH TANAFVSAHR RFLLTGVQFG SPAPRHAEAA  120
SRTPPKQSPR APEFGGQGGM MDWPLGEFFG GFSDFNGGFG FGESGTSKAD SGKLGGSTDG  180
SPYYRSSLEN RNADEIFRQV PEIQWSVPEL PSPPTASGLH WQRRPAAHGA SDSTAFVPDV  240
CSPDNSLRYC FPADQPVTAK CRRKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001794G0130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960801e-103FP096080.1 Phyllostachys edulis cDNA clone: bphyst018e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808322.11e-128B-box zinc finger protein 22-like
TrEMBLA0A1E5WAR41e-130A0A1E5WAR4_9POAL; B-box zinc finger protein 22
STRINGSi022650m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-42light-regulated zinc finger protein 1